<div dir="ltr"><div><div><div><div><div>Hi Kedar,<br><br></div> I was wrong about the dimensions being off. The itkSCIFIOImageIOTest uses a streaming reader with a default of 4 divisions, thus the size 512 y is correct.<br>
<br></div> So it's just that the pixel size was being computed incorrectly. I was mapping SCIFIO and ITK pixel/component types incorrectly. Fixed that, and now this conversion test works for me locally.<br>
<br> Matt: Curtis said you handled merging work to the SCIFIO branch before. I sent a request for push access to ITK.git but you could also just update <a href="http://review.source.kitware.com/#/c/9450/" target="_blank">http://review.source.kitware.com/#/c/9450/</a> with the code from my <a href="https://github.com/hinerm/ITK" target="_blank">scifio-fixes</a> branch.<br>
<br></div> Anyway, just let me know if you'd like me to do anything to merge my code back to the ITK repo.<br><br></div> I'm considering the SCIFIOImageIO fixed for now. I still want to make both the c++ and java code prettier more manageable, but I don't think I have time to work on that right now, since they're non-functional improvements.<br>
<br></div> Please let me know if you come across any more bugs though!<br><br>Thanks again,<br>Mark<br></div><div class="gmail_extra"><br><br><div class="gmail_quote">On Wed, Apr 17, 2013 at 2:32 AM, Kedar Grama <span dir="ltr"><<a href="mailto:gbkedar@gmail.com" target="_blank">gbkedar@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Hi Mark,<div><br></div><div>I turned on the following flags</div><div><div>ITK_USE_64BITS_IDS<br></div>
<div>
ITK_USE_REVIEW </div></div><div>and compiled in Release mode on both windows and linux.<br></div><div>
<br></div><div>Thanks,</div><div><br></div><div>-Kedar</div></div><div class="HOEnZb"><div class="h5"><div class="gmail_extra"><br><br><div class="gmail_quote">On Tue, Apr 16, 2013 at 9:28 PM, Mark Hiner <span dir="ltr"><<a href="mailto:hinerm@gmail.com" target="_blank">hinerm@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div class="gmail_extra">Hi Kedar,<br></div><div class="gmail_extra"><div class="gmail_quote"><br><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div><div><font style="font-size:13px;font-family:arial,sans-serif" face="arial, sans-serif"><br></font></div></div><div><font style="font-size:13px;font-family:arial,sans-serif" face="arial, sans-serif">I just wanted to send a quick note saying that I know Mark is working on this problem. He told me earlier today that he had managed to duplicate the bug (after initial unsuccessful efforts). He will reply back once he has more information.</font></div>
</blockquote></div><br></div><div class="gmail_extra">Just wanted to confirm that I did reproduce the bug. Thanks for verifying it works with the normal BF command line tools. I'm hoping it's just a problem with the ITKBridgePipes java code.<br>
<br></div><div class="gmail_extra">Looking at the error handling at line 746:<br></div><div class="gmail_extra"><br> <span style="font-family:courier new,monospace">errorMessage += std::string( pipedata, pipedatalength );</span><br>
<br></div><div class="gmail_extra">since the <span style="font-family:courier new,monospace">keepReading </span>flag isn't changed here, I was thinking that it could be eating Java exceptions and then hangs waiting for input that never comes, because the Java side has crashed.<br>
<br></div><div class="gmail_extra">Anyway I can't finish testing this tonight because I ruined my ITK install and don't have time to rebuild w/ tests. So I will investigate tomorrow morning.<br><br></div><div class="gmail_extra">
Side note - do you adjust any of the cmake flags with your build?<br><br></div><div class="gmail_extra">Thanks,<br>Mark<br></div></div>
</blockquote></div><br></div>
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