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<DIV style="FONT-SIZE: 11pt; FONT-FAMILY: Calibri,sans-serif">If you are at it, please also check this still open issue:<BR>http://www.na-mic.org/Bug/view.php?id=3010<BR>Volume module GUI permanently modifies the spacing of the selected volume<BR><BR>thanks<BR>Andras</DIV></DIV>
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<SPAN style="FONT-SIZE: 11pt; FONT-FAMILY: Calibri,sans-serif; FONT-WEIGHT: bold">From: </SPAN><SPAN style="FONT-SIZE: 11pt; FONT-FAMILY: Calibri,sans-serif"><A href="mailto:pieper@ibility.net">Steve Pieper</A></SPAN><BR><SPAN style="FONT-SIZE: 11pt; FONT-FAMILY: Calibri,sans-serif; FONT-WEIGHT: bold">Sent: </SPAN><SPAN style="FONT-SIZE: 11pt; FONT-FAMILY: Calibri,sans-serif">2013-08-08 14:33</SPAN><BR><SPAN style="FONT-SIZE: 11pt; FONT-FAMILY: Calibri,sans-serif; FONT-WEIGHT: bold">To: </SPAN><SPAN style="FONT-SIZE: 11pt; FONT-FAMILY: Calibri,sans-serif"><A href="mailto:blowekamp@mail.nih.gov">Bradley Lowekamp</A>; <A href="mailto:slicer-devel@bwh.harvard.edu">slicer-devel@bwh.harvard.edu</A></SPAN><BR><SPAN style="FONT-SIZE: 11pt; FONT-FAMILY: Calibri,sans-serif; FONT-WEIGHT: bold">Cc: </SPAN><SPAN style="FONT-SIZE: 11pt; FONT-FAMILY: Calibri,sans-serif"><A href="mailto:insight-developers@itk.org">Insight Developers</A>; <A href="mailto:julien.finet@kitware.com">Julien Finet</A></SPAN><BR><SPAN style="FONT-SIZE: 11pt; FONT-FAMILY: Calibri,sans-serif; FONT-WEIGHT: bold">Subject: </SPAN><SPAN style="FONT-SIZE: 11pt; FONT-FAMILY: Calibri,sans-serif">Re: [Insight-developers] Bug changing volume metadata by looking atit</SPAN><BR><BR></DIV>
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<DIV>Thanks for finding this Brad - I agree it should be fixed ASAP. We may need to back out some of the precision/units GUI changes (or disable them again).<BR><BR></DIV>
<DIV>-Steve<BR></DIV></DIV>
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<DIV class=gmail_quote>On Thu, Aug 8, 2013 at 8:16 AM, Bradley Lowekamp <SPAN dir=ltr><<A href="mailto:blowekamp@mail.nih.gov" target=_blank>blowekamp@mail.nih.gov</A>></SPAN> wrote:<BR>
<BLOCKQUOTE class=gmail_quote style="PADDING-LEFT: 1ex; MARGIN: 0px 0px 0px 0.8ex; BORDER-LEFT: #ccc 1px solid">Hello,<BR><BR>We are experiencing a rather critical bug, that is changing our Origin, when viewing the "Volume Information" in the Volumes module. This is on yesterdays nightly. I don't know when it started to occur, as we are starting to look at some older dataset which were previously segmented.<BR><BR>This sounded similar to some issues mentioned during the TCON related to the double spin boxes or precision preferences.<BR><BR>Initially:<BR><BR>>>> lm1 = sitkUtils.PullFromSlicer("A Close")<BR>>>> print lm1<BR><BR>Image (0x13b2ca030)<BR> RTTI typeinfo: itk::Image<unsigned short, 3u><BR> Reference Count: 1<BR> Modified Time: 3771<BR> Debug: Off<BR> Observers:<BR> none<BR> Source: (none)<BR> Source output name: (none)<BR> Release Data: Off<BR> Data Released: False<BR> Global Release Data: Off<BR> PipelineMTime: 3597<BR> UpdateMTime: 3770<BR> RealTimeStamp: 0 seconds<BR> LargestPossibleRegion:<BR> Dimension: 3<BR> Index: [0, 0, 0]<BR> Size: [2618, 1368, 325]<BR> BufferedRegion:<BR> Dimension: 3<BR> Index: [0, 0, 0]<BR> Size: [2618, 1368, 325]<BR> RequestedRegion:<BR> Dimension: 3<BR> Index: [0, 0, 0]<BR> Size: [2618, 1368, 325]<BR> Spacing: [160, 160, 480]<BR> Origin: [547339, 218860, 20904.4]<BR> Direction:<BR>-1 0 0<BR>0 -1 0<BR>0 0 1<BR><BR>After viewing in Volumes module:<BR>>>> lm1 = sitkUtils.PullFromSlicer("A Close")<BR>>>> print lm1<BR>Image (0x13b222ad0)<BR> RTTI typeinfo: itk::Image<unsigned short, 3u><BR> Reference Count: 1<BR> Modified Time: 4481<BR> Debug: Off<BR> Observers:<BR> none<BR> Source: (none)<BR> Source output name: (none)<BR> Release Data: Off<BR> Data Released: False<BR> Global Release Data: Off<BR> PipelineMTime: 4307<BR> UpdateMTime: 4480<BR> RealTimeStamp: 0 seconds<BR> LargestPossibleRegion:<BR> Dimension: 3<BR> Index: [0, 0, 0]<BR> Size: [2618, 1368, 325]<BR> BufferedRegion:<BR> Dimension: 3<BR> Index: [0, 0, 0]<BR> Size: [2618, 1368, 325]<BR> RequestedRegion:<BR> Dimension: 3<BR> Index: [0, 0, 0]<BR> Size: [2618, 1368, 325]<BR> Spacing: [160, 160, 480]<BR> Origin: [10000, 10000, 10000]<BR> Direction:<BR>-1 0 0<BR>0 -1 0<BR>0 0 1<BR><BR>Note the change in the origin! We have also observed other odd behaviors such as ROI changing, location, but it's hard for me to figure how what has change with respect to where in those cases.<BR><BR>This data set is a little odd of us because the user specified the units in angstroms and not nano-meters, so everything is 10X bigger than normal.<BR><BR>I will continue to investigate and will write a test which uses synthetic data to reproduce the above, hopefully without needed so many pixels.<BR><BR>Thanks,<BR>Brad<BR>_______________________________________________<BR>Powered by <A href="http://www.kitware.com" target=_blank>www.kitware.com</A><BR><BR>Visit other Kitware open-source projects at<BR><A href="http://www.kitware.com/opensource/opensource.html" target=_blank>http://www.kitware.com/opensource/opensource.html</A><BR><BR>Kitware offers ITK Training Courses, for more information visit:<BR><A href="http://kitware.com/products/protraining.php" target=_blank>http://kitware.com/products/protraining.php</A><BR><BR>Please keep messages on-topic and check the ITK FAQ at:<BR><A href="http://www.itk.org/Wiki/ITK_FAQ" target=_blank>http://www.itk.org/Wiki/ITK_FAQ</A><BR><BR>Follow this link to subscribe/unsubscribe:<BR><A href="http://www.itk.org/mailman/listinfo/insight-developers" target=_blank>http://www.itk.org/mailman/listinfo/insight-developers</A><BR></BLOCKQUOTE></DIV><BR></DIV></BODY></HTML>