<table cellspacing="0" cellpadding="0" border="0" ><tr><td valign="top" style="font: inherit;"><DIV>Hi Luis,</DIV>
<DIV> </DIV>
<DIV>Thanks for your reply. </DIV>
<DIV> </DIV>
<DIV>I am trying to read a sequence of three 2d tif images and write them as one tiff file (with three slices). So that the output image would be one tiff image with 3 slices.</DIV>
<DIV> </DIV>
<DIV>This is the exactly the same thing that is explained in section 7.11.1 of ITKSoftwareGuide(i.e. Reading Image Series). </DIV>
<DIV>I want to mention one interesting thing. While experimenting with the code, when I removed the code line, reader1->SetImageIO( itk::TIFFImageIO::New() ); , the code worked perfectly fine. Is this because it is now using some other ImageIO?</DIV>
<DIV> </DIV>
<DIV>I am really very thankful for any help.</DIV>
<DIV> </DIV>
<DIV>Kind regards</DIV>
<DIV>Nadia<BR></DIV>
<DIV><BR><BR>--- On <B>Sun, 8/31/08, Luis Ibanez <I><luis.ibanez@kitware.com></I></B> wrote:<BR></DIV>
<BLOCKQUOTE style="PADDING-LEFT: 5px; MARGIN-LEFT: 5px; BORDER-LEFT: rgb(16,16,255) 2px solid">From: Luis Ibanez <luis.ibanez@kitware.com><BR>Subject: Re: [Insight-users] need help with my Code<BR>To: nadiaalvi@yahoo.com<BR>Cc: insight-users@itk.org<BR>Date: Sunday, August 31, 2008, 10:04 AM<BR><BR><PRE>Hi Nadia,
The TIFF format doesn't support 3D images.
Are you trying to write a 3D TIFF image ?
or
Are you trying to write 3 TIFF files each one with a 2D image ?
Please let us know,
Thanks
Luis
-----------------
Nadia Alvi wrote:
>
> Hi All,
>
> Please see the code attached.
> It should read the 3 slices and write them as a tiff file but it
> only reads the 2nd slice and write it 3 times in a tiff file.
> Apparently it is incrementing the start index by 1 and reading that
> slice 3 times.
> Can some body please help me in finding what i m doing wrong?
> Many many thanks
> Nadia
>
>
///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
>
> typedef unsigned char PixelType;
> const unsigned int Dimension = 3;
>
> typedef itk::Image< PixelType, Dimension > ImageType;
>
> typedef itk::ImageSeriesReader< ImageType > ReaderType;
> typedef itk::ImageFileWriter<ImageType> WriterType;
>
> WriterType::Pointer writer = WriterType::New();
> ReaderType::Pointer reader1 = ReaderType::New();
> typedef itk::NumericSeriesFileNames NameGeneratorType;
> NameGeneratorType::Pointer nameGenerator = NameGeneratorType::New();
> nameGenerator->SetSeriesFormat(
> "clint_binary_080320_noDescription%04d.tiff" );
> nameGenerator->SetStartIndex(1);
> nameGenerator->SetEndIndex(3);
> nameGenerator->SetIncrementIndex(1);
>
> reader1->SetImageIO( itk::TIFFImageIO::New() );
> reader1->SetFileNames( nameGenerator->GetFileNames() );
>
> writer->SetFileName("labeledImage.tif");
> writer->SetInput(reader1->GetOutput());
> try
> {
>
> writer->Update();
> }
>
>
>
>
> ------------------------------------------------------------------------
>
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</PRE></BLOCKQUOTE></td></tr></table><br>