<br>I've added the source code to this email too, it is imageRegistration8 to which I added some things,<br>such as the mask.<br><br>cheers, Michael<br><br><div class="gmail_quote">On Tue, Feb 23, 2010 at 11:13 AM, michiel mentink <span dir="ltr"><<a href="mailto:michael.mentink@st-hughs.ox.ac.uk">michael.mentink@st-hughs.ox.ac.uk</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">thank you Luis, the source code compiles and links now.<br><br>However, I get this runtime error:<br>
<br>Starting proces... <br><br>ExceptionObject caught !<br><br>itk::ExceptionObject (0x998f420)<br>Location: "void itk::MeanSquaresImageToImageMetric<TFixedImage, TMovingImage>::GetValueAndDerivative(const typename itk::ImageToImageMetric<TFixedImage, TMovingImage>::TransformParametersType&, typename itk::ImageToImageMetric<TFixedImage, TMovingImage>::MeasureType&, typename itk::ImageToImageMetric<TFixedImage, TMovingImage>::DerivativeType&) const [with TFixedImage = itk::Image<float, 3u>, TMovingImage = itk::Image<float, 3u>]" <br>
File: /MMprogs/src/ITK_src/Code/Algorithms/itkMeanSquaresImageToImageMetric.txx<br>Line: 364<br>Description: itk::ERROR: MeanSquaresImageToImageMetric(0x99423f0): All the points mapped to outside of the moving image<br><br>
<br>Just to be sure, I swapped moving and fixed image around and that didn't help...<br><br>I'd like to troubleshoot what is going wrong. If I understand correctly (and correct me if I'm wrong), the register algorithm tries to compare points<br>
that are outside one of the images. Both images do not have the same size, one of them is approximately half the size of the other.<br><br>Can anybody give me some ideas how to get information about point coordinate locations etc?<br>
<br>cheers, Michael<div><div></div><div class="h5"><br><br><div class="gmail_quote">On Mon, Feb 22, 2010 at 11:34 PM, Luis Ibanez <span dir="ltr"><<a href="mailto:luis.ibanez@kitware.com" target="_blank">luis.ibanez@kitware.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
Hi Michiel,<br>
<br>
Why do you want to use a non-structured 3D mask, if you already<br>
have a binary mask from your segmentation, and you just need<br>
to connect it to the itk::ImageMaskSpatialObject ?<br>
<br>
Please look at the example:<br>
<br>
Insight/Examples/Registration/<br>
ImageRegistration12.cxx<br>
<br>
It shows how to use image masks in a registration process.<br>
<br>
Regards,<br>
<br>
<br>
Luis<br>
<br>
<br>
--------------------------------------------<br>
<div><div></div><div>On Mon, Feb 22, 2010 at 12:23 PM, michiel mentink<br>
<<a href="mailto:michael.mentink@st-hughs.ox.ac.uk" target="_blank">michael.mentink@st-hughs.ox.ac.uk</a>> wrote:<br>
><br>
> I have a segmented 3D volume in binary format (foreground, background).<br>
><br>
> I'd like to convert this into an image mask, so I can rigidly register the<br>
> segmented volume, using the mask, to its' original, unsegmented volume.<br>
> (I'm basically extending the imageRegistration8 example).<br>
><br>
> Is it possible to create a non-structured 3D mask? (with random entries<br>
> for mask points)<br>
><br>
> Has anybody got an example how to do so?<br>
><br>
> cheers,<br>
> Michael<br>
><br>
</div></div><div><div></div><div>> _____________________________________<br>
> Powered by <a href="http://www.kitware.com" target="_blank">www.kitware.com</a><br>
><br>
> Visit other Kitware open-source projects at<br>
> <a href="http://www.kitware.com/opensource/opensource.html" target="_blank">http://www.kitware.com/opensource/opensource.html</a><br>
><br>
> Kitware offers ITK Training Courses, for more information visit:<br>
> <a href="http://www.kitware.com/products/protraining.html" target="_blank">http://www.kitware.com/products/protraining.html</a><br>
><br>
> Please keep messages on-topic and check the ITK FAQ at:<br>
> <a href="http://www.itk.org/Wiki/ITK_FAQ" target="_blank">http://www.itk.org/Wiki/ITK_FAQ</a><br>
><br>
> Follow this link to subscribe/unsubscribe:<br>
> <a href="http://www.itk.org/mailman/listinfo/insight-users" target="_blank">http://www.itk.org/mailman/listinfo/insight-users</a><br>
><br>
><br>
</div></div></blockquote></div><br>
</div></div></blockquote></div><br>