Filipa<div><br></div><div>Just to clarify, ignore me if you have done it already: the code included in the link that Xavier has provided is not included (yet) into the standard ITK, so you have to download the source code of that article and copy/include the required .h and .txx files into your our source tree.</div>
<div><br></div><div>Also, notice that most (if not all) ITK filters (including the filters that you found in the insight journal, as MedialCurveImageFilter, aren't *.cpp but *.txx<br><br><div class="gmail_quote">On Thu, Oct 21, 2010 at 12:26 PM, Xavier Mellado Esteban <span dir="ltr"><<a href="mailto:xme@unizar.es">xme@unizar.es</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;"><br>
Hi,<br>
<br>
Go to:<br>
<br>
<a href="http://www.midasjournal.org/browse/publication/165" target="_blank">http://www.midasjournal.org/browse/publication/165</a><br>
<br>
and download the file MedialCurve-IJCv20.zip<br>
<br>
Regards,<br>
Xavi<br>
<br>
<br>
"Ferreira, Filipa I" <<a href="mailto:F.Ferreira@kingston.ac.uk" target="_blank">F.Ferreira@kingston.ac.uk</a>> ha escrito:<div><div></div><div class="h5"><br>
<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<br>
Hi,<br>
<br>
<br>
Does anyone have access to ITK MedialCurveImageFilter.cpp ?<br>
<br>
<br>
<br>
Regards,<br>
Filipa<br>
<br>
<br>
-----Original Message-----<br>
From: <a href="mailto:insight-users-bounces@itk.org" target="_blank">insight-users-bounces@itk.org</a> [mailto:<a href="mailto:insight-users-bounces@itk.org" target="_blank">insight-users-bounces@itk.org</a>] On Behalf Of Erik Tuerke<br>
Sent: 21 October 2010 09:35<br>
To: <a href="mailto:insight-users@itk.org" target="_blank">insight-users@itk.org</a><br>
Subject: [Insight-users] Registration of one sub-brain to full-brain<br>
<br>
Hi!<br>
<br>
I want to register one hemisphere (actually 30 slices of 0.75 mm) to a<br>
fullbrain scan (30 slices of 0.75mm, but shifted to superior for about 5<br>
mm) . Currently i am using a MattesMutualInformationImageToImage metric,<br>
a RegularStepGradientDescentOptimizer and a VersorRigid3DTransform.<br>
<br>
Prior to the registration the hemisphere is roughly aligned to the<br>
fullbrain (only needs translation of few mm and little rotation). If i<br>
start the registration the optimizer finishes with a rotation of about<br>
90 deg x and y. I also tried a VersorRigid3DOptimizer and a<br>
NormalizedCorrelation with almost the same result.<br>
<br>
The scalefactors of my optimizer are:<br>
optimizerScaleRegularStepGradient[0] = 1.0;<br>
optimizerScaleRegularStepGradient[1] = 1.0;<br>
optimizerScaleRegularStepGradient[2] = 1.0;<br>
optimizerScaleRegularStepGradient[3] = 1.0/1000.0;<br>
optimizerScaleRegularStepGradient[4] = 1.0/1000.0;<br>
optimizerScaleRegularStepGradient[5] = 1.0/1000.0;<br>
<br>
I guess the itk examples are proposing the same values.<br>
Is there any trick to apply such a sub-brain registration to a<br>
full-brain registration. The worrying thing is that SPM gets it right :-(<br>
<br>
Thanks and best regards!!<br>
<br>
--<br>
Erik Tuerke<br>
Department of Neurophysics<br>
Max-Planck-Institute for Human Cognitive and Brain Sciences<br>
Stephanstrasse 1A<br>
04103 Leipzig<br>
Germany<br>
Tel: +49 341 99 40-2440<br>
Email: <a href="mailto:tuerke@cbs.mpg.de" target="_blank">tuerke@cbs.mpg.de</a><br>
<a href="http://www.cbs.mpg.de" target="_blank">www.cbs.mpg.de</a><br>
<br>
<br>
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</blockquote>
<br>
<br>
<br></div></div>
__________________________________________________________<br>
<br>
Xavier Mellado Esteban<br>
<br>
Grupo de Tecnologías de las Comunicaciones (GTC).<br>
Instituto de Investigación en Ingeniería de Aragón (I3A).<br>
<br>
Edificio Ada Byron. Laboratorio L3.07<br>
Dpto. Ingeniería Electrónica y Comunicaciones.<br>
Centro Politécnico Superior (CPS).<br>
Campus Río Ebro (Actur). Universidad de Zaragoza.<br>
C/ María de Luna, 1<br>
50018 Zaragoza (Spain)<br>
<br>
Teléfono: 976762704<br>
E-Mail: <a href="mailto:xme@unizar.es" target="_blank">xme@unizar.es</a><br>
MSN Messenger: <a href="mailto:xme@unizar.es" target="_blank">xme@unizar.es</a><br>
__________________________________________________________<div><div></div><div class="h5"><br>
<br>
<br>
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<br>
Kitware offers ITK Training Courses, for more information visit:<br>
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</div></div></blockquote></div><br><br clear="all"><br>-- <br>Sergio Vera<br><br> Alma IT Systems<br> C/ Vilana, 4B, 4º 1ª<br> 08022 Barcelona<br> T. (+34) 932 380 592<br> <a href="http://www.alma3d.com">www.alma3d.com</a><br>
</div>