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<br><div style="font-family: Tahoma; ">Hello,</div><div style="font-family: Tahoma; ">i want to use the filter you told me</div><div style="font-family: Tahoma; "><span class="Apple-style-span" style="color: rgb(42, 42, 42); font-family: 'Segoe UI', Tahoma, Verdana, Arial, sans-serif; ">Alternatively, you can use the Stochastic Tractography Filter in Slicer which does take the measurementframe into account.<br style="line-height: 17px; "><br style="line-height: 17px; "><a href="http://viewvc.slicer.org/viewcvs.cgi/*checkout*/trunk/Applications/CLI/DiffusionApplications/StochasticTractographyFilter/itkStochasticTractographyFilter.txx?rev=5439" target="_blank" style="line-height: 17px; font-weight: inherit; text-decoration: underline; color: rgb(255, 0, 153); cursor: pointer; ">http://viewvc.slicer.org/viewcvs.cgi/*checkout*/trunk/Applications/CLI/DiffusionApplications/StochasticTractographyFilter/itkStochasticTractographyFilter.txx?rev=5439</a></span></div><div><font class="Apple-style-span" color="#2A2A2A" face="'Segoe UI', Tahoma, Verdana, Arial, sans-serif"><br></font></div><div><font class="Apple-style-span" color="#000000"><a href="http://viewvc.slicer.org/viewcvs.cgi/*checkout*/trunk/Applications/CLI/DiffusionApplications/StochasticTractographyFilter/itkStochasticTractographyFilter.txx?rev=5439" target="_blank" style="line-height: 17px; font-weight: inherit; text-decoration: underline; cursor: pointer; "></a><font class="Apple-style-span" face="Tahoma">but i do not know how to get the white matter probability image from my nrrd image.</font></font></div><div><font class="Apple-style-span" color="#2A2A2A"><font class="Apple-style-span" face="Tahoma"></font></font><span class="Apple-style-span" style="font-family: Tahoma; ">thanks,</span></div><div><span class="Apple-style-span" style="font-family: Tahoma; ">Alba<img height="2" src="http://graphics.hotmail.com/greypixel.gif" width="100%" vspace="9"></span></div><br><br><br><br><div id="SkyDrivePlaceholder" style="font-family: Tahoma; "></div><hr id="stopSpelling" style="font-family: Tahoma; "><font class="Apple-style-span" face="Tahoma">From: albagarin1986@hotmail.com</font><br><font class="Apple-style-span" face="Tahoma">To: karthik.krishnan@kitware.com</font><br><font class="Apple-style-span" face="Tahoma">Date: Tue, 15 Feb 2011 11:14:25 +0000</font><br><font class="Apple-style-span" face="Tahoma">CC: insight-users@itk.org</font><br><font class="Apple-style-span" face="Tahoma">Subject: Re: [Insight-users] DiffusionTensor3DReconstructionFilter - measurement frame</font><br><br>
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thanks.</font><div style="font-family: Tahoma; "><br><div><br>
<p align="center"><font color="#000000"><img height="2" src="http://graphics.hotmail.com/greypixel.gif" width="100%" vspace="9"></font></p></div><br><br><br><br><hr id="ecxstopSpelling">Date: Tue, 15 Feb 2011 16:40:59 +0530<br>Subject: Re: [Insight-users] DiffusionTensor3DReconstructionFilter - measurement frame<br>From: karthik.krishnan@kitware.com<br>To: albagarin1986@hotmail.com<br>CC: insight-users@itk.org<br><br>It defaults to identity. ie the absence of the measurement frame is equivalent to saying that the coordinate frame of the gradients is the same as the that of the image orientation.<br><br><div class="ecxgmail_quote">On Tue, Feb 15, 2011 at 3:20 PM, alba garin <span dir="ltr"><<a href="mailto:albagarin1986@hotmail.com">albagarin1986@hotmail.com</a>></span> wrote:<br>
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<br><div>Hello,</div><div>thanks for your quick answer. What happens if in my header file there is no measurement frame? </div><div>thanks,<br><div class="ecxhm">
<p align="center"><font color="#000000"><img src="http://" vspace="9" width="100%" height="2"></font></p></div></div><div class="ecxhm"><br><br><br><br><hr>Date: Tue, 15 Feb 2011 11:16:34 +0530<br>Subject: Re: [Insight-users] DiffusionTensor3DReconstructionFilter - measurement frame<br>
From: <a href="mailto:karthik.krishnan@kitware.com">karthik.krishnan@kitware.com</a><br>To: <a href="mailto:albagarin1986@hotmail.com">albagarin1986@hotmail.com</a><br>CC: <a href="mailto:insight-users@itk.org">insight-users@itk.org</a></div>
<div><div></div><div class="h5"><br><br>Yes. That's right. Please feel free to contribute a patch. The gradient direction needs to be pre-multiplied by the measurement frame. You can externally do this before supplying the container of gradient directions to the filter.<br>
<br>Alternatively, you can use the Stochastic Tractography Filter in Slicer which does take the measurementframe into account.<br><br><a href="http://viewvc.slicer.org/viewcvs.cgi/*checkout*/trunk/Applications/CLI/DiffusionApplications/StochasticTractographyFilter/itkStochasticTractographyFilter.txx?rev=5439" target="_blank">http://viewvc.slicer.org/viewcvs.cgi/*checkout*/trunk/Applications/CLI/DiffusionApplications/StochasticTractographyFilter/itkStochasticTractographyFilter.txx?rev=5439</a><br>
<br><br><div>On Mon, Feb 14, 2011 at 2:19 PM, alba garin <span dir="ltr"><<a href="mailto:albagarin1986@hotmail.com">albagarin1986@hotmail.com</a>></span> wrote:<br><blockquote style="padding-left:1ex">
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Good morning,<div><br></div><div>i read that the DiffusionTensor3DReconstructionFilter does not take into account the measurement frame in gradient directions. żis it still working this way?</div><div><br></div><div>thanks,</div>
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