I penciled it in.<div><br></div><div>- Wes<br><br><div class="gmail_quote">On Tue, Jan 24, 2012 at 10:34 AM, Bradley Lowekamp <span dir="ltr"><<a href="mailto:blowekamp@mail.nih.gov">blowekamp@mail.nih.gov</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div style="word-wrap:break-word"><div class="im">Hello,<div><br></div><div>This is great there is so much interest in R with SimpleITK!</div>
<div><br></div><div>We have a weekly TCON on SimpleITK wednesdays at 9:30am. I think that it would be best if those interested in R and SimpleITK could all get together to discuss what needs to be done to fully support R. This week we need to focus on resolving some issues before the release scheduled for next week. </div>
<div><br></div><div>So I'd like to propose that we have a TCON next Wednesday on R and SimpleITK. Please let me know if this time will work for you.</div><div><br></div><div>Brad</div><div><br></div></div><div><div class="im">
<div>On Jan 24, 2012, at 10:02 AM, brian avants wrote:</div><br></div><div><div class="h5"><blockquote type="cite"><div>hi everyone<br><br>we've been working on this as well --- actually, mainly shrinidhi<br>(cc'd). he's got simpleitk => R compilation set up with cmake and<br>
more or less ready to go as an R package. the package needs to be<br>filled out, though, with R friendly wrapper functions. i will<br>discuss again with him tomorrow.<br><br>brian<br><br><br><br><br><br>On Tue, Jan 24, 2012 at 9:48 AM, Brandon Whitcher <<a href="mailto:bwhitcher@gmail.com" target="_blank">bwhitcher@gmail.com</a>> wrote:<br>
<blockquote type="cite">Wes and Bradley,<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">I know we've gone silent on the R <-> ITK front, I'm still trying to find<br></blockquote>
<blockquote type="cite">someone who will do the heavy lifting.<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">Just to let you (and the other ITK list users) that the annual R users<br></blockquote>
<blockquote type="cite">meeting will be at Vanderbilt University, Nashville, from 12-15 June.<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"> <a href="http://biostat.mc.vanderbilt.edu/wiki/Main/UseR-2012" target="_blank">http://biostat.mc.vanderbilt.edu/wiki/Main/UseR-2012</a><br>
</blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">Abstracts are being accepted until 12 March. It would be a great way of<br></blockquote><blockquote type="cite">promoting ITK to the R community!<br>
</blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">What are your thoughts?<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">cheers...<br></blockquote><blockquote type="cite">
<br></blockquote><blockquote type="cite">Brandon<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">On 4 January 2012 17:42, Wes Turner <<a href="mailto:wes.turner@kitware.com" target="_blank">wes.turner@kitware.com</a>> wrote:<br>
</blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">I agree with Bradley that it should be part of the SimpleITK Package.<br></blockquote>
</blockquote><blockquote type="cite"><blockquote type="cite"> IMHO, it is too integral to the full functioning of the ITK to R interface<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">to keep separate.<br>
</blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">Here are the pointers to the VTK versions of the routines. We will need<br>
</blockquote></blockquote><blockquote type="cite"><blockquote type="cite">to change it to use ITK arrays instead, but that should not be too<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">difficult. I am not sure how optimized these are, but once we get the<br>
</blockquote></blockquote><blockquote type="cite"><blockquote type="cite">functionality encapsulated and into SimpleITK, we can work on optimization.<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">
<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">Basic data conversion:<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite">
<blockquote type="cite"><a href="http://vtk.org/gitweb?p=VTK.git;a=blob;f=Graphics/vtkRAdapter.cxx;h=d6049a5eb748f878df56d40b4c82aeec7fc51471;hb=HEAD" target="_blank">http://vtk.org/gitweb?p=VTK.git;a=blob;f=Graphics/vtkRAdapter.cxx;h=d6049a5eb748f878df56d40b4c82aeec7fc51471;hb=HEAD</a><br>
</blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><a href="http://vtk.org/gitweb?p=VTK.git;a=blob;f=Graphics/vtkRAdapter.h;h=83a2a833c18d8d8ce36d1f4e77e5cf12b5d2c217;hb=HEAD" target="_blank">http://vtk.org/gitweb?p=VTK.git;a=blob;f=Graphics/vtkRAdapter.h;h=83a2a833c18d8d8ce36d1f4e77e5cf12b5d2c217;hb=HEAD</a><br>
</blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">Interface to the R Interpreter (probably not needed)<br></blockquote>
</blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><a href="http://vtk.org/gitweb?p=VTK.git;a=blob;f=Graphics/vtkRAdapter.h;h=83a2a833c18d8d8ce36d1f4e77e5cf12b5d2c217;hb=HEAD" target="_blank">http://vtk.org/gitweb?p=VTK.git;a=blob;f=Graphics/vtkRAdapter.h;h=83a2a833c18d8d8ce36d1f4e77e5cf12b5d2c217;hb=HEAD</a><br>
</blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><a href="http://vtk.org/gitweb?p=VTK.git;a=blob;f=Graphics/vtkRInterface.h;h=e98ce921b5a16c5299fdb8cccbb29793fcd8989b;hb=HEAD" target="_blank">http://vtk.org/gitweb?p=VTK.git;a=blob;f=Graphics/vtkRInterface.h;h=e98ce921b5a16c5299fdb8cccbb29793fcd8989b;hb=HEAD</a><br>
</blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">Pipeline encapsulation (probably not needed)<br></blockquote></blockquote>
<blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><a href="http://vtk.org/gitweb?p=VTK.git;a=blob;f=Graphics/vtkRCalculatorFilter.cxx;h=bdc99183fb2a6b949228fcadbed63e4a9f0e9d9a;hb=HEAD" target="_blank">http://vtk.org/gitweb?p=VTK.git;a=blob;f=Graphics/vtkRCalculatorFilter.cxx;h=bdc99183fb2a6b949228fcadbed63e4a9f0e9d9a;hb=HEAD</a><br>
</blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><a href="http://vtk.org/gitweb?p=VTK.git;a=blob;f=Graphics/vtkRCalculatorFilter.h;h=08f43d42b724a608cc37fdba1268875dab7ceba8;hb=HEAD" target="_blank">http://vtk.org/gitweb?p=VTK.git;a=blob;f=Graphics/vtkRCalculatorFilter.h;h=08f43d42b724a608cc37fdba1268875dab7ceba8;hb=HEAD</a><br>
</blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">- Wes<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">
<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></div></blockquote></div></div></div><div class="im"><br><div>
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<font face="Helvetica" size="3" style="font:normal normal normal 12px/normal Helvetica">========================================================</font></p><p style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px">
<font face="Helvetica" size="3" style="font:normal normal normal 12px/normal Helvetica">Bradley Lowekamp<span> </span><span> </span></font></p><p style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px">
<font face="Helvetica" size="3" style="font:normal normal normal 12px/normal Helvetica">Medical Science and Computing for</font></p>
<p style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px"><font face="Helvetica" size="3" style="font:normal normal normal 12px/normal Helvetica">Office of High Performance Computing and Communications</font></p>
<p style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px"><font face="Helvetica" size="3" style="font:normal normal normal 12px/normal Helvetica">National Library of Medicine<span> </span></font></p><p style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px">
<font face="Helvetica" size="3" style="font:normal normal normal 12px/normal Helvetica"><a href="mailto:blowekamp@mail.nih.gov" target="_blank">blowekamp@mail.nih.gov</a></font></p><br></span></div></span></span><br>
</div>
<br></div></div></blockquote></div><br><br clear="all"><div><br></div>-- <br>Wesley D. Turner, Ph.D.<br>Kitware, Inc.<br>Technical Leader<br>28 Corporate Drive<br>Clifton Park, NY 12065-8662<br>Phone: 518-881-4920<br>
</div>