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</o:shapelayout></xml><![endif]--></head><body lang=FR link=blue vlink=purple><div class=WordSection1><p class=MsoNormal><span lang=EN-US style='color:#1F497D;mso-fareast-language:FR'>I think, I figured it out why I have this problem. In the png attached to this mail you can have a precise idea of what this function is supposed to do. I think that the output image yield by this function has the same size as the input region and this is not what I want. How can I fix this problem ?<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='color:#1F497D;mso-fareast-language:FR'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='color:#1F497D;mso-fareast-language:FR'>Regards,<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='color:#1F497D;mso-fareast-language:FR'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='color:#1F497D;mso-fareast-language:FR'>Ali<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='color:#1F497D'><o:p> </o:p></span></p><div><div style='border:none;border-top:solid #B5C4DF 1.0pt;padding:3.0pt 0cm 0cm 0cm'><p class=MsoNormal><b><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";mso-fareast-language:FR'>De :</span></b><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";mso-fareast-language:FR'> Ali Mouizina [mailto:ali.mouizina@gmail.com] <br><b>Envoyé :</b> lundi 30 janvier 2012 13:05<br><b>À :</b> insight-users@itk.org<br><b>Objet :</b> ImageRegionIterator problem <o:p></o:p></span></p></div></div><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal><span lang=EN-US>Hi,<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US><o:p> </o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US>I’m currently having a problem using ImageRegionIterator. I copy successfully a region of my input image but when I want to process it through a filter it crashes. Here’s the code below :<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US><o:p> </o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US>// In the main program<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US>….<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'>squarediff->SetInput1(read);<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'>squarediff->SetInput2(imshift(deltax,deltay,deltaz));<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'>squarediff->Update(); // -> It crashes here<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US>…..<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='mso-fareast-language:FR'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US>// imshift program<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US><o:p> </o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'>ImageType::Pointer Weights::imshift(<span style='color:blue'>int</span> x, <span style='color:blue'>int</span> y, <span style='color:blue'>int</span> z){<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'> <o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'> <span style='color:blue'>int</span> x1s=max(1,x+1);<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'> <span style='color:blue'>int</span> x2s=min(nb_col,nb_col+x); //nb_col is the number of columns of my input image<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'> </span><span style='font-size:9.5pt;font-family:Consolas;color:blue'>int</span><span style='font-size:9.5pt;font-family:Consolas'> y1s=max(1,y+1);<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span style='font-size:9.5pt;font-family:Consolas'> <span style='color:blue'>int</span> y2s=min(nb_ln,nb_ln+y);<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span style='font-size:9.5pt;font-family:Consolas'> </span><span lang=EN-US style='font-size:9.5pt;font-family:Consolas;color:blue'>int</span><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'> z1s=max(1,z+1);<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'> <span style='color:blue'>int</span> z2s=min(nb_slice,nb_slice+z);<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'><o:p> </o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'> </span><span style='font-size:9.5pt;font-family:Consolas;color:blue'>int</span><span style='font-size:9.5pt;font-family:Consolas'> x1=max (1,-x+1);<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span style='font-size:9.5pt;font-family:Consolas'> <span style='color:blue'>int</span> x2=min(nb_col,nb_col-x);<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span style='font-size:9.5pt;font-family:Consolas'> <span style='color:blue'>int</span> y1=max(1,-y+1);<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span style='font-size:9.5pt;font-family:Consolas'> <span style='color:blue'>int</span> y2=min(nb_ln,nb_ln-y);<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span style='font-size:9.5pt;font-family:Consolas'> <span style='color:blue'>int</span> z1=max(1,-z+1);<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span style='font-size:9.5pt;font-family:Consolas'> <span style='color:blue'>int</span> z2=min(nb_slice,nb_slice-z);<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span style='font-size:9.5pt;font-family:Consolas'><o:p> </o:p></span></p><p class=MsoNormal style='text-autospace:none'><span style='font-size:9.5pt;font-family:Consolas'> ImageType::Pointer image = ImageType::New();<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span style='font-size:9.5pt;font-family:Consolas'><o:p> </o:p></span></p><p class=MsoNormal style='text-autospace:none'><span style='font-size:9.5pt;font-family:Consolas'> <span style='color:blue'>typedef</span> itk::ImageRegionConstIterator< ImageType > ConstIteratorType;<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span style='font-size:9.5pt;font-family:Consolas'> </span><span lang=EN-US style='font-size:9.5pt;font-family:Consolas;color:blue'>typedef</span><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'> itk::ImageRegionIterator< ImageType> IteratorType;<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'><o:p> </o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'> <span style='color:green'>// Input region definition</span><o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'> ImageType::RegionType inputRegion;<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'> ImageType::RegionType::IndexType inputStart;<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'> ImageType::RegionType::SizeType size;<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'> inputStart[0] = x1s-1;<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'> inputStart[1] = y1s-1;<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'> inputStart[1] = z1s-1;<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'> size[0] = x2s-x1s+1;<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'> size[1] = y2s-y1s+1;<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'> size[2] = z2s-z1s+1;<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'> inputRegion.SetSize( size );<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'> inputRegion.SetIndex( inputStart );<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'><o:p> </o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'> <span style='color:green'>// Output region definition</span><o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'> ImageType::RegionType outputRegion;<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'> ImageType::RegionType::IndexType outputStart;<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'> outputStart[0] = x1-1;<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'> outputStart[1] = y1-1;<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'> outputStart[1] = z1-1;<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'> outputRegion.SetSize( size );<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'> outputRegion.SetIndex( outputStart );<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'> <o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'> <span style='color:green'>// !!! Warning : Spacing and origin are not defined as we don't expect to do image registration</span><o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'> </span><span style='font-size:9.5pt;font-family:Consolas'>image->SetRegions( outputRegion );<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span style='font-size:9.5pt;font-family:Consolas'> </span><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'>image->Allocate();<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'> image->FillBuffer(0);<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'><o:p> </o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'> <span style='color:green'>// Copying </span><o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'> ConstIteratorType inputIt( read, inputRegion );<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'> IteratorType outputIt( image, outputRegion );<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'><o:p> </o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'> <span style='color:blue'>for</span> ( inputIt.GoToBegin(), outputIt.GoToBegin(); !inputIt.IsAtEnd(); ++inputIt, ++outputIt)<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'> outputIt.Set( inputIt.Get() );<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'><o:p> </o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-US style='font-size:9.5pt;font-family:Consolas'> <span style='color:blue'>return</span> image;<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span style='font-size:9.5pt;font-family:Consolas'>}<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span style='font-size:9.5pt;font-family:Consolas'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US>This function copies all the values properly as I checked it. Hence, I don’t see why can’t I process it through a filter. By the way this functions aims at copying the pixel values from an input image into an output image by shifting their positions according to x,y and z values. <o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US>Regards,<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US>Ali<o:p></o:p></span></p></div></body></html>