Dear itk users <div>I got hits error in my levelset revolution when the current levelset's surface/contour shrinks to nearly a point. </div><div><br></div><div><div>File: /cm/shared/apps/itk/4.1rc01/ITK/Modules/Filtering/LabelMap/include/itkLabelMap.hxx</div>
<div>Line: 138</div><div>Description: itk::ERROR: LabelMap(0x180d190): No label object with label -3.</div><div><br></div><div>I understand that it is because the current levelset does not have a level of -3 because it is too small to have that, but that could be reasonable for me, because I can have very small structures</div>
<div>I am not allowed to change itk library, but I really want to remove this label checking.</div><div>I could make my own itkLabelMapNewVersion.hxx , put it together in the same dir with my .cxx file.</div><div><br></div>
<div>May I ask is there a better solusion?</div><div><br></div><div>Thanks a lot!!!</div><div><br></div><div>BEST,</div><div><br></div><div>Hui</div><div><br></div><div>On Thu, Apr 5, 2012 at 6:00 PM, <span dir="ltr"><<a href="mailto:insight-users-request@itk.org">insight-users-request@itk.org</a>></span> wrote:</div>
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Today's Topics:<br>
<br>
1. Re: use of std::vector with ITK typedefs (Arvind Rao)<br>
2. Point Set Rigid Registration (Nirav Karani)<br>
3. Re: use of std::vector with ITK typedefs (Matt McCormick)<br>
4. Error itk::Math::Detail::RoundHalfIntegerToEven_64(double)<br>
(Rick Frank)<br>
5. itk 4.1 VS2008 python 2.6 x64 (Martin Dulovits)<br>
6. Re: Error<br>
itk::Math::Detail::RoundHalfIntegerToEven_64(double)<br>
(Bradley Lowekamp)<br>
7. Re: use of std::vector with ITK typedefs (Arvind Rao)<br>
8. build error with gcc 4.7 ('__int128' was not declared in this<br>
scope) (Andrzej Giniewicz)<br>
9. Visual Studio 10 hanging because of size of, the project<br>
(Martin Dulovits)<br>
<br>
<br>
----------------------------------------------------------------------<br>
<br>
Message: 1<br>
Date: Thu, 5 Apr 2012 00:34:07 -0400<br>
From: Arvind Rao <<a href="mailto:arvind.sbia@gmail.com">arvind.sbia@gmail.com</a>><br>
Subject: Re: [Insight-users] use of std::vector with ITK typedefs<br>
To: Matt McCormick <<a href="mailto:matt.mccormick@kitware.com">matt.mccormick@kitware.com</a>><br>
Cc: <a href="mailto:insight-users@itk.org">insight-users@itk.org</a><br>
Message-ID:<br>
<CAEsz-mZ2-M7C_9XmLnE29Y=<a href="mailto:AQ%2BGgVbo%2Bt57eLyy%2BoU8ASBf0Pg@mail.gmail.com">AQ+GgVbo+t57eLyy+oU8ASBf0Pg@mail.gmail.com</a>><br>
Content-Type: text/plain; charset="iso-8859-1"<br>
<br>
Hi Matt,<br>
<br>
Thanks for replying. *ReadStreamFile(...)* is defined below.<br>
The "bad_alloc> caught: St9bad_alloc" error seems to originate from this<br>
function. For clarity, *TPixelType = itk::Vector<float, 3*><br>
<br>
template< typename TPixelType><br>
void *ReadStreamFile*( std::string filename, std::vector<TPixelType><br>
&points )<br>
{<br>
TPixelType dir;<br>
int num;<br>
std::vector<float> vec;<br>
std::ifstream indata( filename.c_str() ); // opens the file<br>
<br>
indata >> num;<br>
while ( !indata.eof() ) { // keep reading until end-of-file<br>
vec.push_back( num );<br>
indata >> num;}<br>
indata.close();<br>
}<br>
<br>
Best,<br>
Arvind<br>
<br>
On Wed, Apr 4, 2012 at 10:53 PM, Matt McCormick<br>
<<a href="mailto:matt.mccormick@kitware.com">matt.mccormick@kitware.com</a>>wrote:<br>
<br>
> Hi Arvind,<br>
><br>
> It looks like the error is happening inside ReadStreamFile, so please<br>
> post how that is declared and defined.<br>
><br>
> Thanks,<br>
> Matt<br>
><br>
> On Wed, Apr 4, 2012 at 8:57 PM, Arvind Rao <<a href="mailto:arvind.sbia@gmail.com">arvind.sbia@gmail.com</a>> wrote:<br>
> > Hi all,<br>
> ><br>
> > In order to read-in a variable number of points from a file I want to<br>
> use a<br>
> > dynamically sized container like STD::VECTOR. The points are stored like<br>
> so:<br>
> > ( points is the vector I use )<br>
> ><br>
> > typedef itk::Image< itk::Vector<ComponentType, Dimension>,<br>
> Dimension><br>
> > PeakImageType;<br>
> > typedef PeakImageType::PixelType<br>
> > DirectionType;<br>
> > std::vector<DirectionType><br>
> > points<br>
> ><br>
> > However, the following try-catch statement gives, at run-time, "bad_alloc<br>
> > caught: St9bad_alloc"<br>
> ><br>
> > try<br>
> > {<br>
> > std::vector<DirectionType> points;<br>
> > ReadStreamFile<DirectionType>( streamArg.getValue(),<br>
> points<br>
> > );<br>
> > }<br>
> > catch (std::bad_alloc& ba)<br>
> > {<br>
> > std::cerr << "bad_alloc caught: " << ba.what() <<<br>
> std::endl;<br>
> > return 0;<br>
> > }<br>
> ><br>
> > So, what is going on? Its seems like POINTS is not being allocated<br>
> properly,<br>
> > but I'm sure how to fix this.<br>
> ><br>
> > Thanks for any help you can provide.<br>
> ><br>
> ><br>
> > --<br>
> > Arvind S. Rao, PhD<br>
> > Section of Biomedical Image Analysis<br>
> > Department of Radiology<br>
> > University of Pennsylvania<br>
> > 3600 Market Street, Suite 380<br>
> > Philadelphia, PA 19104<br>
> ><br>
> ><br>
> ><br>
> > _____________________________________<br>
> > Powered by <a href="http://www.kitware.com" target="_blank">www.kitware.com</a><br>
> ><br>
> > Visit other Kitware open-source projects at<br>
> > <a href="http://www.kitware.com/opensource/opensource.html" target="_blank">http://www.kitware.com/opensource/opensource.html</a><br>
> ><br>
> > Kitware offers ITK Training Courses, for more information visit:<br>
> > <a href="http://www.kitware.com/products/protraining.php" target="_blank">http://www.kitware.com/products/protraining.php</a><br>
> ><br>
> > Please keep messages on-topic and check the ITK FAQ at:<br>
> > <a href="http://www.itk.org/Wiki/ITK_FAQ" target="_blank">http://www.itk.org/Wiki/ITK_FAQ</a><br>
> ><br>
> > Follow this link to subscribe/unsubscribe:<br>
> > <a href="http://www.itk.org/mailman/listinfo/insight-users" target="_blank">http://www.itk.org/mailman/listinfo/insight-users</a><br>
> ><br>
><br>
<br>
<br>
<br>
--<br>
*Arvind S. Rao, PhD*<br>
Section of Biomedical Image Analysis<br>
Department of Radiology<br>
University of Pennsylvania<br>
3600 Market Street, Suite 380<br>
Philadelphia, PA 19104<br>
tel: <a href="tel:%28267%29%20283-8959" value="+12672838959">(267) 283-8959</a><br>
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<br>
Message: 2<br>
Date: Thu, 5 Apr 2012 10:22:18 +0530<br>
From: Nirav Karani <<a href="mailto:niravkarani001@gmail.com">niravkarani001@gmail.com</a>><br>
Subject: [Insight-users] Point Set Rigid Registration<br>
To: <a href="mailto:insight-users@itk.org">insight-users@itk.org</a><br>
Message-ID:<br>
<<a href="mailto:CAJbYoqY4LHWT3ADyncXBGkUF4kT10bNzDZOvUwzjrJFjoefAhA@mail.gmail.com">CAJbYoqY4LHWT3ADyncXBGkUF4kT10bNzDZOvUwzjrJFjoefAhA@mail.gmail.com</a>><br>
Content-Type: text/plain; charset="iso-8859-1"<br>
<br>
Hello!<br>
<br>
I want to register 2 point sets with different number of points. I am using<br>
the example code 'IterativeClosestPoint2.cxx' but it not giving<br>
satisfactory results. Does this code work for point sets without one-to-one<br>
correlation? The code uses Euler3DTransform, EuclideanDistancePointMetric<br>
and LevenbergMarquardtOptimizer. I'm certain that only rigid registration<br>
is required at this stage. What other transforms, metrics and optimizers<br>
can work in such a scenario? I have initialized the transform to expected<br>
translation and rotation values using the SetRotation and SetTranslation<br>
methods. But the results of the registration are way off the mark. Any<br>
suggestions will be greatly appreciated :)<br>
<br>
Thanks,<br>
Nirav.<br>
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<br>
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<br>
Message: 3<br>
Date: Thu, 5 Apr 2012 00:59:23 -0400<br>
From: Matt McCormick <<a href="mailto:matt.mccormick@kitware.com">matt.mccormick@kitware.com</a>><br>
Subject: Re: [Insight-users] use of std::vector with ITK typedefs<br>
To: Arvind Rao <<a href="mailto:arvind.sbia@gmail.com">arvind.sbia@gmail.com</a>><br>
Cc: <a href="mailto:insight-users@itk.org">insight-users@itk.org</a><br>
Message-ID:<br>
<CALzTN-SsUuCmEF=1RWF=<a href="mailto:xHQT9AZzGMm83oLPahzCzKVVGjy%2BmQ@mail.gmail.com">xHQT9AZzGMm83oLPahzCzKVVGjy+mQ@mail.gmail.com</a>><br>
Content-Type: text/plain; charset=ISO-8859-1<br>
<br>
Hi Arvind,<br>
<br>
That cannot be all of the function because "points" is not used inside.<br>
<br>
Matt<br>
<br>
On Thu, Apr 5, 2012 at 12:34 AM, Arvind Rao <<a href="mailto:arvind.sbia@gmail.com">arvind.sbia@gmail.com</a>> wrote:<br>
> Hi Matt,<br>
><br>
> Thanks for replying. ReadStreamFile(...) is defined below. The?"bad_alloc><br>
> caught: St9bad_alloc" error seems to originate from this function.?For<br>
> clarity, TPixelType =?itk::Vector<float, 3><br>
><br>
> template< typename TPixelType><br>
> void ReadStreamFile( std::string filename, std::vector<TPixelType> &points )<br>
> {<br>
> ? ?TPixelType dir;<br>
> ? ?int num;<br>
> ? ?std::vector<float> vec;<br>
> ? ?std::ifstream indata( filename.c_str() ); // opens the file<br>
><br>
> ? ?indata >> num;<br>
> ? ?while ( !indata.eof() ) ?{ // keep reading until end-of-file<br>
> ? ? ? vec.push_back( num );<br>
> ? ? ? indata >> num;}<br>
> ? ?indata.close();<br>
> }<br>
><br>
> Best,<br>
> Arvind<br>
><br>
> On Wed, Apr 4, 2012 at 10:53 PM, Matt McCormick <<a href="mailto:matt.mccormick@kitware.com">matt.mccormick@kitware.com</a>><br>
> wrote:<br>
>><br>
>> Hi Arvind,<br>
>><br>
>> It looks like the error is happening inside ReadStreamFile, so please<br>
>> post how that is declared and defined.<br>
>><br>
>> Thanks,<br>
>> Matt<br>
>><br>
>> On Wed, Apr 4, 2012 at 8:57 PM, Arvind Rao <<a href="mailto:arvind.sbia@gmail.com">arvind.sbia@gmail.com</a>> wrote:<br>
>> > Hi all,<br>
>> ><br>
>> > In order to read-in a variable number of points from a file I want to<br>
>> > use a<br>
>> > dynamically sized container like STD::VECTOR. The points are stored like<br>
>> > so:<br>
>> > ( points is the vector I use )<br>
>> ><br>
>> > ? ? ? typedef itk::Image< itk::Vector<ComponentType, Dimension>,<br>
>> > Dimension><br>
>> > ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? PeakImageType;<br>
>> > ? ? ? typedef PeakImageType::PixelType<br>
>> > ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?DirectionType;<br>
>> > ? ? ? std::vector<DirectionType><br>
>> > ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?points<br>
>> ><br>
>> > However, the following try-catch statement gives, at<br>
>> > run-time,?"bad_alloc<br>
>> > caught: St9bad_alloc"<br>
>> ><br>
>> > ? ? ??try<br>
>> > ? ? ? {<br>
>> > ? ? ? ? ? ? ? ? std::vector<DirectionType> points;<br>
>> > ? ? ? ? ? ? ? ? ReadStreamFile<DirectionType>( streamArg.getValue(),<br>
>> > points<br>
>> > );<br>
>> > ? ? ? }<br>
>> > ? ? ?catch (std::bad_alloc& ba)<br>
>> > ? ? ? {<br>
>> > ? ? ? ? ? ? ? ? std::cerr << "bad_alloc caught: " << ba.what() <<<br>
>> > std::endl;<br>
>> > ? ? ? ? ? ? ? ? return 0;<br>
>> > ? ? ? }<br>
>> ><br>
>> > So, what is going on? Its seems like POINTS is not being allocated<br>
>> > properly,<br>
>> > but I'm sure how to fix this.<br>
>> ><br>
>> > Thanks for any help you can provide.<br>
>> ><br>
>> ><br>
>> > --<br>
>> > Arvind S. Rao, PhD<br>
>> > Section of Biomedical Image Analysis<br>
>> > Department of Radiology<br>
>> > University of Pennsylvania<br>
>> > 3600 Market Street, Suite 380<br>
>> > Philadelphia, PA 19104<br>
>> ><br>
>> ><br>
>> ><br>
>> > _____________________________________<br>
>> > Powered by <a href="http://www.kitware.com" target="_blank">www.kitware.com</a><br>
>> ><br>
>> > Visit other Kitware open-source projects at<br>
>> > <a href="http://www.kitware.com/opensource/opensource.html" target="_blank">http://www.kitware.com/opensource/opensource.html</a><br>
>> ><br>
>> > Kitware offers ITK Training Courses, for more information visit:<br>
>> > <a href="http://www.kitware.com/products/protraining.php" target="_blank">http://www.kitware.com/products/protraining.php</a><br>
>> ><br>
>> > Please keep messages on-topic and check the ITK FAQ at:<br>
>> > <a href="http://www.itk.org/Wiki/ITK_FAQ" target="_blank">http://www.itk.org/Wiki/ITK_FAQ</a><br>
>> ><br>
>> > Follow this link to subscribe/unsubscribe:<br>
>> > <a href="http://www.itk.org/mailman/listinfo/insight-users" target="_blank">http://www.itk.org/mailman/listinfo/insight-users</a><br>
>> ><br>
><br>
><br>
><br>
><br>
> --<br>
> Arvind S. Rao, PhD<br>
> Section of Biomedical Image Analysis<br>
> Department of Radiology<br>
> University of Pennsylvania<br>
> 3600 Market Street, Suite 380<br>
> Philadelphia, PA 19104<br>
> tel: <a href="tel:%28267%29%20283-8959" value="+12672838959">(267) 283-8959</a><br>
><br>
<br>
<br>
------------------------------<br>
<br>
Message: 4<br>
Date: Thu, 5 Apr 2012 06:54:08 -0400<br>
From: "Rick Frank" <<a href="mailto:rickf@fullspectrumsw.com">rickf@fullspectrumsw.com</a>><br>
Subject: [Insight-users] Error<br>
itk::Math::Detail::RoundHalfIntegerToEven_64(double)<br>
To: <<a href="mailto:insight-users@itk.org">insight-users@itk.org</a>><br>
Message-ID: <<a href="mailto:558C1453-6F8E-4CE1-A9BF-4D319F491DF0@fullspectrumsw.com">558C1453-6F8E-4CE1-A9BF-4D319F491DF0@fullspectrumsw.com</a>><br>
Content-Type: text/plain; charset="us-ascii"<br>
<br>
I'm seeing something like this using visual studio 10 on windows 7 also<br>
<br>
<br>
I will post details<br>
<br>
Rick Frank<br>
<br>
On Apr 4, 2012, at 11:08 PM, "<a href="mailto:insight-users-request@itk.org">insight-users-request@itk.org</a>" <<a href="mailto:insight-users-request@itk.org">insight-users-request@itk.org</a>> wrote:<br>
<br>
> [Insight-users] Error<br>
> itk::Math::Detail::RoundHalfIntegerToEven_64(double)<br>
<br>
<br>
------------------------------<br>
<br>
Message: 5<br>
Date: Thu, 05 Apr 2012 14:23:28 +0200<br>
From: Martin Dulovits <<a href="mailto:martin.dulovits@woogieworks.at">martin.dulovits@woogieworks.at</a>><br>
Subject: [Insight-users] itk 4.1 VS2008 python 2.6 x64<br>
To: <a href="mailto:insight-users@itk.org">insight-users@itk.org</a><br>
Message-ID: <<a href="mailto:4F7D8EC0.2090604@woogieworks.at">4F7D8EC0.2090604@woogieworks.at</a>><br>
Content-Type: text/plain; charset=ISO-8859-1; format=flowed<br>
<br>
I am trying to build itk 4.1 VS2008 python 2.6 x64 windows with python<br>
bindings for the last few day but failed completely.<br>
So my question would be is it possible at all ? Has anybody succeeded to<br>
build with this configuration ? Especially the python bindings ?<br>
Sometimes the dll built, but the wrappers always failed.<br>
Should I choose an older version to work with Studio 2008 ?<br>
<br>
thx for any help<br>
<br>
martin<br>
<br>
<br>
<br>
------------------------------<br>
<br>
Message: 6<br>
Date: Thu, 5 Apr 2012 08:44:06 -0400<br>
From: Bradley Lowekamp <<a href="mailto:blowekamp@mail.nih.gov">blowekamp@mail.nih.gov</a>><br>
Subject: Re: [Insight-users] Error<br>
itk::Math::Detail::RoundHalfIntegerToEven_64(double)<br>
To: Rick Frank <<a href="mailto:rickf@fullspectrumsw.com">rickf@fullspectrumsw.com</a>><br>
Cc: "<a href="mailto:insight-users@itk.org">insight-users@itk.org</a>" <<a href="mailto:insight-users@itk.org">insight-users@itk.org</a>><br>
Message-ID: <<a href="mailto:20293F0D-2349-4C7E-B644-D33608F0DD44@mail.nih.gov">20293F0D-2349-4C7E-B644-D33608F0DD44@mail.nih.gov</a>><br>
Content-Type: text/plain; charset="us-ascii"<br>
<br>
Recently, this error popped up on the SimpleITK dashboard with visual studio with ITKv4. Apparently, a 32-bit build of SimpleITK was finding a 64-bit build of ITK. I am not sure of all the details, but matching the correct ITK build solved this problem. It may be related to yours.<br>
<br>
Brad<br>
<br>
<br>
On Apr 5, 2012, at 6:54 AM, Rick Frank wrote:<br>
<br>
> I'm seeing something like this using visual studio 10 on windows 7 also<br>
><br>
><br>
> I will post details<br>
><br>
> Rick Frank<br>
><br>
> On Apr 4, 2012, at 11:08 PM, "<a href="mailto:insight-users-request@itk.org">insight-users-request@itk.org</a>" <<a href="mailto:insight-users-request@itk.org">insight-users-request@itk.org</a>> wrote:<br>
><br>
>> [Insight-users] Error<br>
>> itk::Math::Detail::RoundHalfIntegerToEven_64(double)<br>
> _____________________________________<br>
> Powered by <a href="http://www.kitware.com" target="_blank">www.kitware.com</a><br>
><br>
> Visit other Kitware open-source projects at<br>
> <a href="http://www.kitware.com/opensource/opensource.html" target="_blank">http://www.kitware.com/opensource/opensource.html</a><br>
><br>
> Kitware offers ITK Training Courses, for more information visit:<br>
> <a href="http://www.kitware.com/products/protraining.php" target="_blank">http://www.kitware.com/products/protraining.php</a><br>
><br>
> Please keep messages on-topic and check the ITK FAQ at:<br>
> <a href="http://www.itk.org/Wiki/ITK_FAQ" target="_blank">http://www.itk.org/Wiki/ITK_FAQ</a><br>
><br>
> Follow this link to subscribe/unsubscribe:<br>
> <a href="http://www.itk.org/mailman/listinfo/insight-users" target="_blank">http://www.itk.org/mailman/listinfo/insight-users</a><br>
<br>
========================================================<br>
Bradley Lowekamp<br>
Medical Science and Computing for<br>
Office of High Performance Computing and Communications<br>
National Library of Medicine<br>
<a href="mailto:blowekamp@mail.nih.gov">blowekamp@mail.nih.gov</a><br>
<br>
<br>
<br>
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<br>
Message: 7<br>
Date: Thu, 5 Apr 2012 09:53:48 -0400<br>
From: Arvind Rao <<a href="mailto:arvind.sbia@gmail.com">arvind.sbia@gmail.com</a>><br>
Subject: Re: [Insight-users] use of std::vector with ITK typedefs<br>
To: Matt McCormick <<a href="mailto:matt.mccormick@kitware.com">matt.mccormick@kitware.com</a>><br>
Cc: <a href="mailto:insight-users@itk.org">insight-users@itk.org</a><br>
Message-ID:<br>
<<a href="mailto:CAEsz-mb17EpN2kcnLSQSFUZ0cjpt41G7S2yZnMffdnE8Vf-Dzg@mail.gmail.com">CAEsz-mb17EpN2kcnLSQSFUZ0cjpt41G7S2yZnMffdnE8Vf-Dzg@mail.gmail.com</a>><br>
Content-Type: text/plain; charset="iso-8859-1"<br>
<br>
Hi Matt,<br>
<br>
My apologizes. For brevity and debugging I removed the portion of code<br>
which fills points. The full code for *ReadStreamFle* is below.<br>
<br>
template< typename TPixelType><br>
void ReadStreamFile( std::string filename, std::vector<TPixelType> &points )<br>
{<br>
TPixelType dir;<br>
int num;<br>
std::vector<float> vec;<br>
<br>
std::ifstream indata( filename.c_str() ); // opens the file<br>
if(!indata) { // file couldn't be opened<br>
cerr << "Error: file could not be opened" << endl;<br>
exit(1);<br>
}<br>
<br>
indata >> num;<br>
while ( !indata.eof() )<br>
{ // keep reading until end-of-file<br>
vec.push_back( num );<br>
indata >> num;<br>
}<br>
indata.close();<br>
std::cout << vec.size() << "\n";<br>
<br>
for(int j=0; j < int(vec.size()); j=+3)<br>
{<br>
dir[0] = vec[j];<br>
dir[1] = vec[j+1];<br>
dir[2] = vec[j+2];<br>
points.push_back( dir );<br>
}<br>
}<br>
<br>
Best,<br>
Arvind<br>
<br>
On Thu, Apr 5, 2012 at 12:59 AM, Matt McCormick<br>
<<a href="mailto:matt.mccormick@kitware.com">matt.mccormick@kitware.com</a>>wrote:<br>
<br>
> Hi Arvind,<br>
><br>
> That cannot be all of the function because "points" is not used inside.<br>
><br>
> Matt<br>
><br>
> On Thu, Apr 5, 2012 at 12:34 AM, Arvind Rao <<a href="mailto:arvind.sbia@gmail.com">arvind.sbia@gmail.com</a>> wrote:<br>
> > Hi Matt,<br>
> ><br>
> > Thanks for replying. ReadStreamFile(...) is defined below.<br>
> The "bad_alloc><br>
> > caught: St9bad_alloc" error seems to originate from this function. For<br>
> > clarity, TPixelType = itk::Vector<float, 3><br>
> ><br>
> > template< typename TPixelType><br>
> > void ReadStreamFile( std::string filename, std::vector<TPixelType><br>
> &points )<br>
> > {<br>
> > TPixelType dir;<br>
> > int num;<br>
> > std::vector<float> vec;<br>
> > std::ifstream indata( filename.c_str() ); // opens the file<br>
> ><br>
> > indata >> num;<br>
> > while ( !indata.eof() ) { // keep reading until end-of-file<br>
> > vec.push_back( num );<br>
> > indata >> num;}<br>
> > indata.close();<br>
> > }<br>
> ><br>
> > Best,<br>
> > Arvind<br>
> ><br>
> > On Wed, Apr 4, 2012 at 10:53 PM, Matt McCormick <<br>
> <a href="mailto:matt.mccormick@kitware.com">matt.mccormick@kitware.com</a>><br>
> > wrote:<br>
> >><br>
> >> Hi Arvind,<br>
> >><br>
> >> It looks like the error is happening inside ReadStreamFile, so please<br>
> >> post how that is declared and defined.<br>
> >><br>
> >> Thanks,<br>
> >> Matt<br>
> >><br>
> >> On Wed, Apr 4, 2012 at 8:57 PM, Arvind Rao <<a href="mailto:arvind.sbia@gmail.com">arvind.sbia@gmail.com</a>><br>
> wrote:<br>
> >> > Hi all,<br>
> >> ><br>
> >> > In order to read-in a variable number of points from a file I want to<br>
> >> > use a<br>
> >> > dynamically sized container like STD::VECTOR. The points are stored<br>
> like<br>
> >> > so:<br>
> >> > ( points is the vector I use )<br>
> >> ><br>
> >> > typedef itk::Image< itk::Vector<ComponentType, Dimension>,<br>
> >> > Dimension><br>
> >> > PeakImageType;<br>
> >> > typedef PeakImageType::PixelType<br>
> >> > DirectionType;<br>
> >> > std::vector<DirectionType><br>
> >> > points<br>
> >> ><br>
> >> > However, the following try-catch statement gives, at<br>
> >> > run-time, "bad_alloc<br>
> >> > caught: St9bad_alloc"<br>
> >> ><br>
> >> > try<br>
> >> > {<br>
> >> > std::vector<DirectionType> points;<br>
> >> > ReadStreamFile<DirectionType>( streamArg.getValue(),<br>
> >> > points<br>
> >> > );<br>
> >> > }<br>
> >> > catch (std::bad_alloc& ba)<br>
> >> > {<br>
> >> > std::cerr << "bad_alloc caught: " << ba.what() <<<br>
> >> > std::endl;<br>
> >> > return 0;<br>
> >> > }<br>
> >> ><br>
> >> > So, what is going on? Its seems like POINTS is not being allocated<br>
> >> > properly,<br>
> >> > but I'm sure how to fix this.<br>
> >> ><br>
> >> > Thanks for any help you can provide.<br>
> >> ><br>
> >> ><br>
> >> > --<br>
> >> > Arvind S. Rao, PhD<br>
> >> > Section of Biomedical Image Analysis<br>
> >> > Department of Radiology<br>
> >> > University of Pennsylvania<br>
> >> > 3600 Market Street, Suite 380<br>
> >> > Philadelphia, PA 19104<br>
> >> ><br>
> >> ><br>
> >> ><br>
> >> > _____________________________________<br>
> >> > Powered by <a href="http://www.kitware.com" target="_blank">www.kitware.com</a><br>
> >> ><br>
> >> > Visit other Kitware open-source projects at<br>
> >> > <a href="http://www.kitware.com/opensource/opensource.html" target="_blank">http://www.kitware.com/opensource/opensource.html</a><br>
> >> ><br>
> >> > Kitware offers ITK Training Courses, for more information visit:<br>
> >> > <a href="http://www.kitware.com/products/protraining.php" target="_blank">http://www.kitware.com/products/protraining.php</a><br>
> >> ><br>
> >> > Please keep messages on-topic and check the ITK FAQ at:<br>
> >> > <a href="http://www.itk.org/Wiki/ITK_FAQ" target="_blank">http://www.itk.org/Wiki/ITK_FAQ</a><br>
> >> ><br>
> >> > Follow this link to subscribe/unsubscribe:<br>
> >> > <a href="http://www.itk.org/mailman/listinfo/insight-users" target="_blank">http://www.itk.org/mailman/listinfo/insight-users</a><br>
> >> ><br>
> ><br>
> ><br>
> ><br>
> ><br>
> > --<br>
> > Arvind S. Rao, PhD<br>
> > Section of Biomedical Image Analysis<br>
> > Department of Radiology<br>
> > University of Pennsylvania<br>
> > 3600 Market Street, Suite 380<br>
> > Philadelphia, PA 19104<br>
> > tel: <a href="tel:%28267%29%20283-8959" value="+12672838959">(267) 283-8959</a><br>
> ><br>
><br>
<br>
<br>
<br>
--<br>
*Arvind S. Rao, PhD*<br>
Section of Biomedical Image Analysis<br>
Department of Radiology<br>
University of Pennsylvania<br>
3600 Market Street, Suite 380<br>
Philadelphia, PA 19104<br>
tel: <a href="tel:%28267%29%20283-8959" value="+12672838959">(267) 283-8959</a><br>
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<br>
Message: 8<br>
Date: Thu, 5 Apr 2012 15:54:44 +0200<br>
From: Andrzej Giniewicz <<a href="mailto:gginiu@gmail.com">gginiu@gmail.com</a>><br>
Subject: [Insight-users] build error with gcc 4.7 ('__int128' was not<br>
declared in this scope)<br>
To: <a href="mailto:insight-users@itk.org">insight-users@itk.org</a><br>
Message-ID:<br>
<CALMDwnDEagD4ysY_z9-KW=<a href="mailto:7o54hoa5GOw1YeVKcHJa00myGisw@mail.gmail.com">7o54hoa5GOw1YeVKcHJa00myGisw@mail.gmail.com</a>><br>
Content-Type: text/plain; charset=ISO-8859-1<br>
<br>
Hi there,<br>
<br>
I'm trying to build itk 4.1.0 using following configuration:<br>
<br>
cmake \<br>
-DCMAKE_BUILD_TYPE:STRING=Release \<br>
-DBUILD_TESTING:BOOL=OFF \<br>
-DBUILD_EXAMPLES:BOOL=OFF \<br>
-DBUILD_SHARED_LIBS:BOOL=ON \<br>
-DCMAKE_INSTALL_PREFIX:FILEPATH=/usr \<br>
-DITK_USE_REVIEW:BOOL=ON \<br>
-DITK_USE_SYSTEM_SWIG:BOOL=ON \<br>
-DITK_WRAPPING:BOOL=ON \<br>
-DITK_WRAP_PYTHON:BOOL=ON \<br>
-DPYTHON_EXECUTABLE:PATH=/usr/bin/python2 \<br>
-DPYTHON_INCLUDE_DIR:PATH=/usr/include/python2.7 \<br>
-DPYTHON_LIBRARY:PATH=/usr/lib/<a href="http://libpython2.7.so" target="_blank">libpython2.7.so</a> \<br>
../InsightToolkit-4.1.0<br>
<br>
After make and some long time, it fails. I'm not 100% sure, but I<br>
believe it started happening after update to GCC 4.7, as it worked<br>
before. It fails on vcl_complex.xml, by looking into<br>
Wrapping/Modules/ITKCommon/CMakeFiles/ITKCommonGccXML.dir/build.make I<br>
was able to track the failure to following line (tried with both<br>
bundled gccxml and cvs version):<br>
<br>
gccxml -fxml-start=_cable_<br>
-fxml=/home/giniu/arch2/insight-toolkit/src/build/Wrapping/Modules/ITKCommon/vcl_complex.xml<br>
--gccxml-gcc-options<br>
/home/giniu/arch2/insight-toolkit/src/build/Wrapping/Modules/ITKCommon/gcc_xml.inc<br>
-DCSWIG -DCABLE_CONFIGURATION -DITK_MANUAL_INSTANTIATION<br>
/home/giniu/arch2/insight-toolkit/src/build/Wrapping/Modules/ITKCommon/vcl_complex.cxx<br>
In file included from<br>
/home/giniu/arch2/insight-toolkit/src/InsightToolkit-4.1.0/Modules/ThirdParty/VNL/src/vxl/vcl/iso/vcl_limits.h:6,<br>
from<br>
/home/giniu/arch2/insight-toolkit/src/InsightToolkit-4.1.0/Modules/ThirdParty/VNL/src/vxl/vcl/vcl_limits.h:12,<br>
from<br>
/home/giniu/arch2/insight-toolkit/src/InsightToolkit-4.1.0/Modules/Core/Common/include/itkNumericTraits.h:45,<br>
from<br>
/home/giniu/arch2/insight-toolkit/src/InsightToolkit-4.1.0/Modules/Core/Common/include/itkNumericTraitsFixedArrayPixel.h:21,<br>
from<br>
/home/giniu/arch2/insight-toolkit/src/InsightToolkit-4.1.0/Modules/Core/Common/include/itkFixedArray.h:286,<br>
from<br>
/home/giniu/arch2/insight-toolkit/src/InsightToolkit-4.1.0/Modules/Core/Common/include/itkIndex.h:22,<br>
from<br>
/home/giniu/arch2/insight-toolkit/src/InsightToolkit-4.1.0/Modules/Filtering/LabelMap/include/itkLabelObjectLine.h:21,<br>
from<br>
/home/giniu/arch2/insight-toolkit/src/InsightToolkit-4.1.0/Modules/Filtering/LabelMap/include/itkLabelObject.h:23,<br>
from<br>
/home/giniu/arch2/insight-toolkit/src/InsightToolkit-4.1.0/Modules/Filtering/LabelMap/include/itkShapeLabelObject.h:21,<br>
from<br>
/home/giniu/arch2/insight-toolkit/src/InsightToolkit-4.1.0/Modules/Filtering/LabelMap/include/itkStatisticsLabelObject.h:21,<br>
from<br>
/home/giniu/arch2/insight-toolkit/src/build/Wrapping/Modules/ITKCommon/vcl_complex.cxx:2:<br>
/usr/lib/gcc/x86_64-unknown-linux-gnu/4.7.0/../../../../include/c++/4.7.0/limits:1405:<br>
error: '__int128' was not declared in this scope<br>
/usr/lib/gcc/x86_64-unknown-linux-gnu/4.7.0/../../../../include/c++/4.7.0/limits:1405:<br>
error: template argument 1 is invalid<br>
/usr/lib/gcc/x86_64-unknown-linux-gnu/4.7.0/../../../../include/c++/4.7.0/limits:1479:<br>
error: template argument 1 is invalid<br>
<br>
As this is kind of generated stuff, I'm not sure how to further track<br>
this issue - I'd be happy to provide any files/logs/info that might<br>
help tracking it.<br>
<br>
Cheers,<br>
Andrzej.<br>
<br>
<br>
------------------------------<br>
<br>
Message: 9<br>
Date: Thu, 05 Apr 2012 16:04:07 +0200<br>
From: Martin Dulovits <<a href="mailto:martin.dulovits@woogieworks.at">martin.dulovits@woogieworks.at</a>><br>
Subject: [Insight-users] Visual Studio 10 hanging because of size of,<br>
the project<br>
To: <a href="mailto:insight-users@itk.org">insight-users@itk.org</a><br>
Message-ID: <<a href="mailto:4F7DA657.9000307@woogieworks.at">4F7DA657.9000307@woogieworks.at</a>><br>
Content-Type: text/plain; charset="iso-8859-1"; Format="flowed"<br>
<br>
On 4/5/2012 5:08 AM, <a href="mailto:insight-users-request@itk.org">insight-users-request@itk.org</a> wrote:<br>
> [Insight-users] Visual Studio 10 hanging because of size of<br>
> the project<br>
> <a href="mailto:To%3Ainsight-users@itk.org">To:insight-users@itk.org</a>, ITK<<a href="mailto:insight-developers@itk.org">insight-developers@itk.org</a>><br>
> Message-ID:<br>
> <CALzTN-Rtu=<a href="mailto:cZsS16WMEch%2BHfpd6g8A0hFgKgfTEcJy2JNEaiPw@mail.gmail.com">cZsS16WMEch+Hfpd6g8A0hFgKgfTEcJy2JNEaiPw@mail.gmail.com</a>><br>
> Content-Type: text/plain; charset=ISO-8859-1<br>
><br>
> Hi,<br>
><br>
> If you had trouble building ITKv4 on Visual Studio 10 with<br>
> BUILD_EXAMPLES ON and BUILD_TESTING ON, please try this patch and let<br>
> us know your experiences:<br>
><br>
> <a href="http://review.source.kitware.com/#/c/4912/1" target="_blank">http://review.source.kitware.com/#/c/4912/1</a><br>
><br>
> If you are not familiar with Git, the steps would be to first install MSysGit:<br>
><br>
> <a href="http://code.google.com/p/msysgit/downloads/list" target="_blank">http://code.google.com/p/msysgit/downloads/list</a><br>
><br>
> Then, from the MSys Git Bash terminal:<br>
><br>
> git clonehttp://<a href="http://itk.org/ITK.git" target="_blank">itk.org/ITK.git</a><br>
> cd ITK<br>
> git fetchhttp://<a href="http://review.source.kitware.com/p/ITK" target="_blank">review.source.kitware.com/p/ITK</a><br>
> refs/changes/12/4912/2&& git checkout FETCH_HEAD -b<br>
> vsHeaderTestRelease<br>
><br>
> Then configure with CMake, build, ...<br>
><br>
> Thanks,<br>
> Matt<br>
Just tried to build but failed with following error<br>
T:/svnitk/binBuild/Wrapping/Generators/GccXML/gccxml/share/gccxml-0.9/Vc10/Include/vector:82:<br>
error: '__noop' was not declared in this scope<br>
C:\Program Files<br>
(x86)\MSBuild\Microsoft.Cpp\v4.0\Microsoft.CppCommon.targets(151,5):<br>
error MSB6006: "cmd.exe" exited with code 1.<br>
<br>
tried to build MinSizeRel x64 on VS2010sp1 prof.<br>
<br>
martin<br>
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</blockquote></div><br></div>