<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hello,<div><br></div><div>There is WrapITK, which is closer to a direct mapping of much of ITK to python and maybe Java [1]. With ITK v4 it is now part of the ITK source tree and can be compiled as part with ITK by turn on the cmake variable ITK_WRAP_PYTHON.</div><div><br></div><div>While SimpleITK is not designed to implement pixel wise algorithms, as that is likely best done and the C++ level of ITK, the Image class does contain the __iter__, next, __len__, __getitem__, and __setitem__ methods to allow convenient ( not fast ) access to the image as a python container. The iterator interface may be optimized further in the future. </div><div><br></div><div>It is also correct that SimpleITK does not have an interface to the ITK registration framework yet. If you are looking for a simple interface to ITK registration that are the application orient project such as University of Iowa BRAINS, or the University of Pennsylvania ANTS.</div><div><br></div><div>Brad</div><div><br></div><div><br></div><div>[1] <a href="http://www.insight-journal.org/browse/publication/85/">http://www.insight-journal.org/browse/publication/85/</a></div><div><br><div><div>On Jul 12, 2012, at 12:12 PM, Ahmed Halaweish, Ph.D. wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite">
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<div style="color: rgb(0, 0, 0); font-family: Calibri, sans-serif; ">Willi,</div>
<div style="color: rgb(0, 0, 0); font-family: Calibri, sans-serif; "> Thanks for the prompt reply … I guess I'll have to go back to the roots again :D.</div>
<div style="color: rgb(0, 0, 0); font-family: Calibri, sans-serif; "> Is there any other way to utilize the full functionality of ITK with Python?</div>
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<div style="color: rgb(0, 0, 0); font-family: Calibri, sans-serif; ">Cheers</div>
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<div><font face="Arial" style="font-family: Calibri, sans-serif; color: rgb(0, 0, 0); font-size: 13px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><b><font size="3">Ahmed
F. Halaweish Ph.D.</font></b></font><span style="color: rgb(0, 0, 0); font-family: Tahoma; font-size: 13px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; display: inline !important; float: none; "></span>
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<font face="Arial">Postdoctoral Research Fellow</font></div>
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<font face="Arial">Duke Image Analysis Laboratory (DIAL)</font></div>
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<font face="Arial">Center for Advanced MR Development (CAMRD)</font></div>
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<font face="Arial">Department of Radiology</font></div>
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<font face="Arial">Duke University School of Medicine</font></div>
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<span style="font-weight:bold">From: </span>Willi Huber <<a href="mailto:w.huber@ymail.com">w.huber@ymail.com</a>><br>
<span style="font-weight:bold">Reply-To: </span>Willi Huber <<a href="mailto:w.huber@ymail.com">w.huber@ymail.com</a>><br>
<span style="font-weight:bold">Date: </span>Thursday, July 12, 2012 10:31 AM<br>
<span style="font-weight:bold">To: </span>Ahmed Halaweish <<a href="mailto:ahmed.halaweish@dm.duke.edu">ahmed.halaweish@dm.duke.edu</a>>, "<a href="mailto:insight-users@itk.org">insight-users@itk.org</a>" <<a href="mailto:insight-users@itk.org">insight-users@itk.org</a>><br>
<span style="font-weight:bold">Subject: </span>Re: [Insight-users] Simple ITK Iterators & Registration<br>
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<div><span>Hello Ahmed,</span></div>
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<div>no it is so far not implemented in SimpleITK.</div>
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<div>SimpleITK is a very young project and has a different philosophy. Its goal is to allow an easier access to the ITK therefore it will take some time until everybody agreed the implementation of a new way for example to use registration.</div>
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<div>For registration you have to use the ITK itself and maybe build it by yourself. <a href="http://www.itk.org/Wiki/ITK" style="font-size: 10pt; ">http://www.itk.org/Wiki/ITK</a><span style="font-size: 10pt; "> should be a good starting point</span></div>
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<div>Cheers,</div>
<div>Willi</div>
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<b><span style="font-weight:bold;">Von:</span></b> "Ahmed Halaweish, Ph.D." <<a href="mailto:ahmed.halaweish@duke.edu">ahmed.halaweish@duke.edu</a>><br>
<b><span style="font-weight: bold;">An:</span></b> "<a href="mailto:insight-users@itk.org">insight-users@itk.org</a>" <<a href="mailto:insight-users@itk.org">insight-users@itk.org</a>>
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<b><span style="font-weight: bold;">Gesendet:</span></b> 15:21 Donnerstag, 12.Juli 2012<br>
<b><span style="font-weight: bold;">Betreff:</span></b> [Insight-users] Simple ITK Iterators & Registration<br>
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<div style="font-family: Calibri, sans-serif; "> I have looked at the doxygen site and I can't seem to find any iterator and/or registration classes in the list of implemented classes. Have these been implemented yet? If not, when will they be? I keep getting
a "module object has no attribute" error when trying to implement an iterator in my python scripts.</div>
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<div style="font-family: Calibri, sans-serif; ">I am running Python 2.7 & SimpleITK 0.4.0 on Mac OSX 10.6.8.</div>
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<div style="font-family: Calibri, sans-serif; ">Cheers</div>
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<div><font style="font-family: Calibri, sans-serif; color: rgb(0, 0, 0); font-size: 13px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; "><b><font size="3">Ahmed
F. Halaweish Ph.D.</font></b></font><span style="color: rgb(0, 0, 0); font-family: Tahoma; font-size: 13px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; display: inline; float: none; "></span>
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<font face="Arial">Postdoctoral Research Fellow</font></div>
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<font face="Arial">Duke Image Analysis Laboratory (DIAL)</font></div>
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<font face="Arial">Center for Advanced MR Development (CAMRD)</font></div>
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<font face="Arial">Department of Radiology</font></div>
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<font face="Arial">Duke University School of Medicine</font></div>
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