Hi Adrian,<div><br></div><div>I am very sorry that you never received a reply to this message. Although I am subscribed to the ITK users list, I do not read it carefully due to the heavy traffic, and so missed this message until now.</div>
<div><br></div><div>If you are still interested in the Bio-Formats ITK plugin, and still having problems, please feel free to send a mail to the ome-users mailing list (<a href="http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users/">http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users/</a>), which is the best place to receive support for Bio-Formats.</div>
<div><br></div><div>Regards,</div><div>Curtis</div><div><br><br><div class="gmail_quote">On Fri, Oct 7, 2011 at 10:53 AM, Adrian Friebel Work <span dir="ltr"><<a href="mailto:friebel@izbi.uni-leipzig.de" target="_blank">friebel@izbi.uni-leipzig.de</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi,<br>
I have some problems using the BioFormats Plugin. I want to read in .oib or .ome.tiff files with three or more (colour) channels.<br>
I got the BioFormats Plugin working, I can see some of the metadata and I can pass the Image to VTK and render it.<br>
However, when I read in the test.oib /ome.tiff file (dimension order is XYCZT with three Channels) with an itk::ImageFileReader<<u></u>VectorImageType> VectorReaderType ( itk::Vector<float, 3> VectorPixelType; itk::Image<VectorPixelType, 2> VectorImageType; ) the information in a pixel is for all three channels the same.<br>
Seemingly, the three-channel-image is converted into a greyscale-image and the three vector dimensions are filled with the greyscale images.<br>
<br>
Am I doing something wrong? How can I read in e.g. an .ome.tiff file with x channels into an VectorImage templated over a vector of dimensionality x?<br>
<br>
<br>
Thanks in advance,<br>
Adrian.<br>
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