Hi all,<br><br>I am trying to use bioformats and itk. I downloaded
and compiled bf-itk-pipe using cmake by linking against ITK 3.2:<br><br><a href="https://github.com/openmicroscopy/bioformats/tree/develop/components/native/bf-itk-pipe">https://github.com/openmicroscopy/bioformats/tree/develop/components/native/bf-itk-pipe</a><br>
<br><br>I tested out itkBFImageInfo
and ./itkRGBBioFormatsImageIOTest on a few simple LSM images. It works
great and writes out all the associated metadata and pixel data for the first timepoint. <br>
<br>My LSM microscopy image is 5D. It is X-Y-Z-Channel-Time. I am interested in extracting individual timepoints from the LSM file for processing. The filter seems to be using itkStreamingImageFilter. I set the NumberOfStreams
to 10 but that still seems to still write out only the first image. <br><br>How do I set the output requestion region for an individual timepoint?<br>
<br>Thank you,<br><br>Kishore