<html>
<head>
<meta content="text/html; charset=ISO-8859-1"
http-equiv="Content-Type">
</head>
<body bgcolor="#FFFFFF" text="#000000">
<div class="moz-cite-prefix">Ok, now it crashes during the make
step, when it tries to compile the pyBuffer module.<br>
I think is wrong the path that I set for
PYTHON_NUMARRAY_INCLUDE_DIR.<br>
What is your setting for that variable?<br>
I tried
/usr/lib64/python2.7/site-packages/numpy/numarray/include/numpy
and doesn't work.<br>
I know that the first part is os dependent but after the python2.7
location should be the same.<br>
<br>
Thank you.<br>
Paolo <br>
<br>
<br>
Il 30/01/2013 15:21, Bradley Lowekamp ha scritto:<br>
</div>
<blockquote
cite="mid:BC3FE61E-FF10-419D-9083-7024AD36E4B9@mail.nih.gov"
type="cite">
<meta http-equiv="Content-Type" content="text/html;
charset=ISO-8859-1">
Paolo,
<div><br>
</div>
<div>You are correct with the command line: </div>
<div><br>
</div>
<div><a moz-do-not-send="true"
href="git://github.com/tobiasmaier/itkPyBuffer.git">git://github.com/tobiasmaier/itkPyBuffer.git</a>
Modules/External/itkPyBuffer</div>
<div><br>
</div>
<div><br>
</div>
<div>When you place an ITK module into the ITK External or Remote
subdirectory, it become just like the build-in ITK modules. It
gets built along side of the rest of ITK, and also will get
wrapped for this case.</div>
<div><br>
</div>
<div><br>
</div>
<div>After running the above command, I re-ran ccmake and it
informed me that PYTHON_NUMARRAY_INCLUDE_DIR, needed to be
defined.</div>
<div><br>
</div>
<div>The variable that needs to be set
is Module_ITKBufferConvertion. This should be enabled. I thought
this use to come up in the CMake GUI, but it did not for me. I
had to go into the CMakeCache.txt file and manually change the
variable to ON to enable it.</div>
<div><br>
</div>
<div>Hope that helps,</div>
<div>Brad</div>
<div><br>
<div>
<div>On Jan 30, 2013, at 8:57 AM, Paolo Zaffino <<a
moz-do-not-send="true" href="mailto:p.zaffino@yahoo.it">p.zaffino@yahoo.it</a>>
wrote:</div>
<br class="Apple-interchange-newline">
<blockquote type="cite">
<meta http-equiv="Content-Type" content="text/html;
charset=ISO-8859-1">
<div bgcolor="#FFFFFF" text="#000000">
<div class="moz-cite-prefix">Dear Brad,<br>
thanks for your answer but I'm not yet able to get
working that module.<br>
First I think that the command is git clone <a
moz-do-not-send="true"
href="git://github.com/tobiasmaier/itkPyBuffer.git">git://github.com/tobiasmaier/itkPyBuffer.git</a>
Modules/External/itkPyBuffer, right?<br>
Anyway I didn't understand how compile it, if I have to
compile it before ITK or if it will be compiled during
the itk building.<br>
The problem is that I don't see the option to enable
itkPyBuffer in the cmake step for ITK.<br>
<br>
Yes, I know of simpleITK, but in this case I need of
ITK...anyway thanks for the advice.<br>
<br>
Thanks a lot.<br>
Paolo<br>
<br>
<br>
<br>
<br>
Il 29/01/2013 15:20, Bradley Lowekamp ha scritto:<br>
</div>
<blockquote
cite="mid:4487A4FB-9F07-45ED-8C10-C904FDED9F9F@mail.nih.gov"
type="cite"> Hello Paolo,
<div><br>
</div>
<div>I have used the the following external module for
get numpy support for WrapITK:</div>
<div><br>
</div>
<div><a moz-do-not-send="true"
href="https://github.com/tobiasmaier/itkPyBuffer">https://github.com/tobiasmaier/itkPyBuffer</a></div>
<div><br>
</div>
<div><br>
</div>
<div>From the root ITK source dir just clone the repo
into the Modules/External directory:</div>
<div><br>
</div>
<div>git clone <a moz-do-not-send="true"
href="git://github.com/tobiasmaier/itkPyBuffer.git">git://github.com/tobiasmaier/itkPyBuffer.git</a>
Modules/External/</div>
<div><br>
</div>
<div>Rerun ccmake, and turn on this module. And
recompile.</div>
<div><br>
</div>
<div><br>
</div>
<div>While you are waiting you can check to see if
SimpleITK has the functionality you need.</div>
<div>I'd like to point out that SimpleITK has built in
support for numpy, and has binary eggs available for
download. </div>
<div><a moz-do-not-send="true"
href="http://www.itk.org/Wiki/ITK/Release_4/SimpleITK">http://www.itk.org/Wiki/ITK/Release_4/SimpleITK</a></div>
<div><br>
</div>
<div>Brad</div>
<div><br>
<div>
<div>On Jan 29, 2013, at 8:46 AM, Paolo Zaffino <<a
moz-do-not-send="true"
href="mailto:p.zaffino@yahoo.it">p.zaffino@yahoo.it</a>>
wrote:</div>
<br class="Apple-interchange-newline">
<blockquote type="cite">
<div>
<div style="background-color: rgb(255, 255,
255); font-family: 'times new roman', 'new
york', times, serif; font-size: 12pt; ">
<div><font face="times new roman, new york,
times, serif">Dear ITK community,</font></div>
<div><font face="times new roman, new york,
times, serif"><br>
</font></div>
<div><font face="times new roman, new york,
times, serif">I compiled ITK 4.3.1 with
the Python support and all went fine.</font></div>
<div><font face="times new roman, new york,
times, serif">I am able to run ITK
functions from Python, but I'm also
interested in converting an ITK image into
a Numpy matrix and viceversa.</font></div>
<div><font face="times new roman, new york,
times, serif">How can I do this?</font></div>
<div><font face="times new roman, new york,
times, serif"><br>
</font></div>
<div><font face="times new roman, new york,
times, serif">Thank you very much.</font></div>
<div><font face="times new roman, new york,
times, serif">Regards.</font></div>
<div><font face="times new roman, new york,
times, serif">Paolo</font></div>
</div>
</div>
_____________________________________<br>
Powered by <a moz-do-not-send="true"
href="http://www.kitware.com/">www.kitware.com</a><br>
<br>
Visit other Kitware open-source projects at<br>
<a moz-do-not-send="true"
href="http://www.kitware.com/opensource/opensource.html">http://www.kitware.com/opensource/opensource.html</a><br>
<br>
Kitware offers ITK Training Courses, for more
information visit:<br>
<a moz-do-not-send="true"
class="moz-txt-link-freetext"
href="http://www.kitware.com/products/protraining.php">http://www.kitware.com/products/protraining.php</a><br>
<br>
Please keep messages on-topic and check the ITK
FAQ at:<br>
<a moz-do-not-send="true"
class="moz-txt-link-freetext"
href="http://www.itk.org/Wiki/ITK_FAQ">http://www.itk.org/Wiki/ITK_FAQ</a><br>
<br>
Follow this link to subscribe/unsubscribe:<br>
<a moz-do-not-send="true"
class="moz-txt-link-freetext"
href="http://www.itk.org/mailman/listinfo/insight-users">http://www.itk.org/mailman/listinfo/insight-users</a><br>
</blockquote>
</div>
<br>
</div>
</blockquote>
<br>
</div>
</blockquote>
</div>
<br>
</div>
</blockquote>
<br>
</body>
</html>