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<p class="MsoNormal" style="MARGIN: 0in 0in 0pt"><span style="mso-no-proof: yes"><font size="3" face="Calibri">H<font size="3">i
<font size="3">Hans:</font></font></font></span></p>
<p class="MsoNormal" style="MARGIN: 0in 0in 0pt"><br>
<span style="mso-no-proof: yes"></span></p>
</font>
<p class="MsoNormal" style="MARGIN: 0in 0in 0pt"><font size="2" face="Tahoma"><span style="mso-no-proof: yes"><font size="3" face="Calibri"><font size="3"><font size="3"><font size="3">I have built ITK 3.20.1 with options: ITK_USE_REVIEW = ON, ITK_USE_STATISTICS
= ON, BUILD_SHARED_LIBS = <font size="3">ON, CMAKE_BUILD_TYPE = <font size="3">Release, ITK_USE_OPTIMIZED<font size="3">_REGISTRATION = ON.</font></font></font></font></font></font></font></span></font></p>
<p class="MsoNormal" style="MARGIN: 0in 0in 0pt"><br>
<span style="mso-no-proof: yes"></span></p>
<p class="MsoNormal" style="MARGIN: 0in 0in 0pt"><span style="mso-no-proof: yes"><font size="3" face="Calibri"><font size="3"><font size="3"><font size="3"><font size="3"><font size="3"><font size="3"><font size="3">T<font size="3">hen i followed the instructions
to compile the code with:</font></font></font></font></font></font></font></font></font></span></p>
<p class="MsoNormal" style="MARGIN: 0in 0in 0pt"><span style="mso-no-proof: yes"><font size="3" face="Calibri">cmake -DITK_DIR=/work/01515/wliu3/ITK_Binary/ -DCMAKE_BUILD_TYPE=Release ../LogSymmetricDemons-master</font></span></p>
<p class="MsoNormal" style="MARGIN: 0in 0in 0pt"><br>
<span style="mso-no-proof: yes"></span></p>
<p class="MsoNormal" style="MARGIN: 0in 0in 0pt"><span style="mso-no-proof: yes"><font size="3" face="Calibri"><font size="3">and
<br>
</font></font></span></p>
<p class="MsoNormal" style="MARGIN: 0in 0in 0pt"><br>
<span style="mso-no-proof: yes"></span></p>
<p class="MsoNormal" style="MARGIN: 0in 0in 0pt"><span style="mso-no-proof: yes"><font size="3" face="Calibri"><font size="3"><font size="3">make -j2</font></font></font></span></p>
<p class="MsoNormal" style="MARGIN: 0in 0in 0pt"><br>
<span style="mso-no-proof: yes"></span></p>
<p class="MsoNormal" style="MARGIN: 0in 0in 0pt"><span style="mso-no-proof: yes"><font size="3" face="Calibri"><font size="3"><font size="3"><font size="3">However, the compil<font size="3">ing can<font size="3">n<font size="3">ot be finis<font size="3">hed
succe<font size="3">ssfully. Here are the error message:</font></font></font></font></font></font></font></font></font></span></p>
<p class="MsoNormal" style="MARGIN: 0in 0in 0pt"><span style="mso-no-proof: yes"><font size="3" face="Calibri"><font size="3"><font size="3"><font size="3"><font size="3"><font size="3"><font size="3"><font size="3"><font size="3"><br>
</font></font></font></font></font></font></font></font></font></span></p>
<p class="MsoNormal" style="MARGIN: 0in 0in 0pt"><span style="mso-no-proof: yes"><font size="3" face="Calibri"><font size="3"><font size="3"><font size="3"><font size="3"><font size="3"><font size="3"></font></font></font></font></font></font></font>Scanning
dependencies of target MakeTestImages<br>
Scanning dependencies of target itkDisplacementFieldCompositionFilterTest<br>
[ 11%] Building CXX object Testing/CMakeFiles/itkDisplacementFieldCompositionFilterTest.dir/itkDisplacementFieldCompositionFilterTest.cxx.o<br>
[ 11%] Building CXX object Testing/CMakeFiles/MakeTestImages.dir/MakeTestImages.cxx.o<br>
/work/01515/wliu3/LogSymmetricDemons-master/Testing/MakeTestImages.cxx: In function ‘void GetRegion(typename ImageType::Pointer&, typename SpatialObjectType::Pointer&, typename ImageType::RegionType&) [with SpatialObjectType = itk::EllipseSpatialObject<2u>,
ImageType = itk::Image<unsigned char, 2u>]’:<br>
/work/01515/wliu3/LogSymmetricDemons-master/Testing/MakeTestImages.cxx:134: instantiated from here<br>
/work/01515/wliu3/LogSymmetricDemons-master/Testing/MakeTestImages.cxx:69: warning: converting to ‘long unsigned int’ from ‘double’<br>
/work/01515/wliu3/LogSymmetricDemons-master/Testing/MakeTestImages.cxx:77: error: ‘class itk::ImageRegion<2u>’ has no member named ‘GetUpperIndex’<br>
/work/01515/wliu3/LogSymmetricDemons-master/Testing/MakeTestImages.cxx:134: instantiated from here<br>
/work/01515/wliu3/LogSymmetricDemons-master/Testing/MakeTestImages.cxx:85: error: ‘class itk::ImageRegion<2u>’ has no member named ‘GetUpperIndex’<br>
/work/01515/wliu3/LogSymmetricDemons-master/Testing/MakeTestImages.cxx: In function ‘void GetRegion(typename ImageType::Pointer&, typename SpatialObjectType::Pointer&, typename ImageType::RegionType&) [with SpatialObjectType = itk::BoxSpatialObject<2u>, ImageType
= itk::Image<unsigned char, 2u>]’:<br>
/work/01515/wliu3/LogSymmetricDemons-master/Testing/MakeTestImages.cxx:171: instantiated from here<br>
/work/01515/wliu3/LogSymmetricDemons-master/Testing/MakeTestImages.cxx:69: warning: converting to ‘long unsigned int’ from ‘double’<br>
/work/01515/wliu3/LogSymmetricDemons-master/Testing/MakeTestImages.cxx:77: error: ‘class itk::ImageRegion<2u>’ has no member named ‘GetUpperIndex’<br>
/work/01515/wliu3/LogSymmetricDemons-master/Testing/MakeTestImages.cxx:85: error: ‘class itk::ImageRegion<2u>’ has no member named ‘GetUpperIndex’<br>
make[2]: *** [Testing/CMakeFiles/MakeTestImages.dir/MakeTestImages.cxx.o] Error 1<br>
make[1]: *** [Testing/CMakeFiles/MakeTestImages.dir/all] Error 2<br>
make[1]: *** Waiting for unfinished jobs....<br>
Linking CXX executable ../tests/itkDisplacementFieldCompositionFilterTest<br>
[ 11%] Built target itkDisplacementFieldCompositionFilterTest<br>
make: *** [all] Error 2<br>
</span></p>
<p class="MsoNormal" style="MARGIN: 0in 0in 0pt"><br>
<span style="mso-no-proof: yes"></span></p>
<p class="MsoNormal" style="MARGIN: 0in 0in 0pt"><span style="mso-no-proof: yes"><font size="3" face="Calibri"><font size="3">It seems that clas<font size="3">s::I<font size="3">mageReg<font size="3">ion do<font size="3">es not have the member named 'GetUpperIndex'</font></font></font></font></font></font></span></p>
<p class="MsoNormal" style="MARGIN: 0in 0in 0pt"><br>
<span style="mso-no-proof: yes"></span></p>
<p class="MsoNormal" style="MARGIN: 0in 0in 0pt"><span style="mso-no-proof: yes"><font size="3" face="Calibri"><font size="3"><font size="3"><font size="3"><font size="3"><font size="3"><font size="3">So i have to install ITK 4.3.0? I am a little bit concerned
that my old codes based on ITK 3.20.1 <font size="3">could <font size="3">run well using ITK 4.3.0?</font></font></font></font></font></font></font></font></font></span></p>
<p class="MsoNormal" style="MARGIN: 0in 0in 0pt"><br>
<span style="mso-no-proof: yes"></span></p>
<p class="MsoNormal" style="MARGIN: 0in 0in 0pt"><span style="mso-no-proof: yes"><font size="3" face="Calibri"><font size="3"><font size="3"><font size="3"><font size="3"><font size="3"><font size="3"><font size="3"><font size="3"><font size="3">T<font size="3">hanks</font></font></font></font></font></font></font></font></font></font></font></span></p>
<p class="MsoNormal" style="MARGIN: 0in 0in 0pt"><br>
<span style="mso-no-proof: yes"></span></p>
<span style="mso-no-proof: yes"><font size="3" face="Calibri"><font size="3"><font size="3"><font size="3"><font size="3"><font size="3"><font size="3"><font size="3"><font size="3"><font size="3"><font size="3"><font size="3">Wei</font></font></font></font></font></font></font></font></font></font></font></font></span><br>
<span style="mso-no-proof: yes"></span>
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<div><font size="2" face="Tahoma">
<p class="MsoNormal" style="MARGIN: 0in 0in 0pt"><span style="mso-no-proof: yes"><o:p><font size="3" face="Calibri"> </font></o:p></span></p>
<span style="FONT-SIZE: 11pt; FONT-FAMILY: 'Calibri','sans-serif'; mso-fareast-font-family: 'Times New Roman'; mso-bidi-font-family: 'Times New Roman'; mso-ansi-language: EN-US; mso-fareast-language: EN-US; mso-bidi-language: AR-SA"><!--?xml:namespace prefix = v ns = "urn:schemas-microsoft-com:vml" /--><v:shapetype id="_x0000_t75" coordsize="21600,21600" o:spt="75" o:preferrelative="t" path="m@4@5l@4@11@9@11@9@5xe" filled="f" stroked="f"><v:stroke joinstyle="miter"></v:stroke><v:formulas><v:f eqn="if lineDrawn pixelLineWidth 0"></v:f><v:f eqn="sum @0 1 0"></v:f><v:f eqn="sum 0 0 @1"></v:f><v:f eqn="prod @2 1 2"></v:f><v:f eqn="prod @3 21600 pixelWidth"></v:f><v:f eqn="prod @3 21600 pixelHeight"></v:f><v:f eqn="sum @0 0 1"></v:f><v:f eqn="prod @6 1 2"></v:f><v:f eqn="prod @7 21600 pixelWidth"></v:f><v:f eqn="sum @8 21600 0"></v:f><v:f eqn="prod @7 21600 pixelHeight"></v:f><v:f eqn="sum @10 21600 0"></v:f></v:formulas><v:path o:extrusionok="f" gradientshapeok="t" o:connecttype="rect"></v:path><o:lock v:ext="edit" aspectratio="t"></o:lock></v:shapetype><v:shape id="_x0000_i1025" style="WIDTH: 149.25pt; HEIGHT: 73.5pt" type="#_x0000_t75"><v:imagedata src="file:///C:\DOCUME~1\wliu3\LOCALS~1\Temp\msohtmlclip1\01\clip_image001.png" o:title=""></v:imagedata></v:shape></span></font></div>
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<div style="direction: ltr;" id="divRpF891152"><font size="2" color="#000000" face="Tahoma"><b>From:</b> Johnson, Hans J [hans-johnson@uiowa.edu]<br>
<b>Sent:</b> Wednesday, April 10, 2013 5:04 PM<br>
<b>To:</b> Liu,Wei; insight-users@itk.org<br>
<b>Subject:</b> Re: [Insight-users] Frequency container saturated for Instance (ITK 3.20)<br>
</font><br>
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<div></div>
<div>
<div>Wei,</div>
<div><br>
</div>
<div>You may want to try using an ITKv4 version of the symmetric force demon: We have an updated version of the original on github.</div>
<div><br>
</div>
<div><a href="https://github.com/BRAINSia/LogSymmetricDemons" target="_blank">https://github.com/BRAINSia/LogSymmetricDemons</a></div>
<div><br>
</div>
<div>Hans</div>
<div><br>
</div>
<div><br>
</div>
<span id="OLK_SRC_BODY_SECTION">
<div style="font-family:Calibri; font-size:11pt; text-align:left; color:black; border-bottom:medium none; border-left:medium none; padding-bottom:0in; padding-left:0in; padding-right:0in; border-top:#b5c4df 1pt solid; border-right:medium none; padding-top:3pt">
<span style="font-weight:bold">From: </span><Liu>, Wei <<a href="mailto:WLiu3@mdanderson.org" target="_blank">WLiu3@mdanderson.org</a>><br>
<span style="font-weight:bold">Date: </span>Wednesday, April 10, 2013 4:22 PM<br>
<span style="font-weight:bold">To: </span>"<a href="mailto:insight-users@itk.org" target="_blank">insight-users@itk.org</a>" <<a href="mailto:insight-users@itk.org" target="_blank">insight-users@itk.org</a>><br>
<span style="font-weight:bold">Subject: </span>[Insight-users] Frequency container saturated for Instance (ITK 3.20)<br>
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<p class="MsoNormal">I am using ITK 3.20 to do symmetric force demon registration, which uses histogram matching. I found that for some CTs, it works fine. However, for some CTs, it does not work with the following error message.</p>
<p class="MsoNormal"> </p>
<p class="MsoNormal">itk::ExceptionObject (0x1c1679e0)</p>
<p class="MsoNormal">Location: "bool itk::Statistics::DenseFrequencyContainer::IncreaseFrequency(long unsigned int, float)"</p>
<p class="MsoNormal">File: /work/01515/wliu3/InsightToolkit-3.20.0/Code/Numerics/Statistics/itkDenseFrequencyContainer.cxx</p>
<p class="MsoNormal">Line: 84</p>
<p class="MsoNormal">Description: itk::ERROR: DenseFrequencyContainer(0x1c1431b0): Frequency container saturated for Instance</p>
<p class="MsoNormal"> </p>
<p class="MsoNormal">I understood that this problem was in ITK 3.16, but i supposed this problem was fixed in ITK 3.20 by using the new statistics framework. Is my understanding wrong? Could you please give me some hints how to solve this problem?</p>
<p class="MsoNormal"> </p>
<p class="MsoNormal">Thanks</p>
<p class="MsoNormal"> </p>
<p class="MsoNormal">Wei</p>
<p class="MsoNormal"> </p>
<p class="MsoNormal"> </p>
<p class="MsoNormal">Wei Liu, PhD</p>
<p class="MsoNormal">Assistant Professor</p>
<p class="MsoNormal">The University of Texas M.D. Anderson Cancer Center</p>
<p class="MsoNormal">Department of Radiation Physics - Unit 94</p>
<p class="MsoNormal">Houston, Texas 77030</p>
<p class="MsoNormal"><b><span style="color:red"><a href="mailto:agatson@mdanderson.org" target="_blank"><span style="font-family:'Times New Roman',serif; color:blue">wliu3@mdanderson.org</span></a></span></b></p>
<p class="MsoNormal">Office: 713.794.4112</p>
<p class="MsoNormal">Fax: 713.563.2545</p>
<p class="MsoNormal">Pager: 713.404.6064</p>
<p class="MsoNormal"> </p>
<p class="MsoNormal"><img id="Picture_x0020_1" src="cid:image001.png@01CE3607.91D30600" height="98" width="199" border="0"></p>
<p class="MsoNormal"> </p>
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