<div dir="ltr">you are probably running out of RAM</div><div class="gmail_extra"><br clear="all"><div><div><br></div>brian<br><div><br></div><div><br></div></div>
<br><br><div class="gmail_quote">On Tue, Aug 6, 2013 at 12:50 PM, Õž§¾§ <span dir="ltr"><<a href="mailto:zhangjj831203@gmail.com" target="_blank">zhangjj831203@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div dir="ltr">yes, the file is almost 1G.<div><br></div><div>is there upper limit of the input file?</div><div><br></div><div><br></div></div><div class="HOEnZb"><div class="h5"><div class="gmail_extra"><br><br><div class="gmail_quote">
2013/8/6 brian avants <span dir="ltr"><<a href="mailto:stnava@gmail.com" target="_blank">stnava@gmail.com</a>></span><br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">it may be related to that file - is it huge in size?<div><br></div><div>also - please stay on the discussion list</div>
</div><div class="gmail_extra"><span><font color="#888888"><br clear="all"><div><div><br></div>brian<br><div><br></div>
<div><br></div></div></font></span><div><div>
<br><br><div class="gmail_quote">On Tue, Aug 6, 2013 at 12:17 PM, Õž§¾§ <span dir="ltr"><<a href="mailto:zhangjj831203@gmail.com" target="_blank">zhangjj831203@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div dir="ltr">Hi Brian,<div><br></div><div>Many thanks for your reply. I also post this problem to ANTs mailing list.</div><div><br></div><div>I have successfully compiled ITK4.4.1+latest ANTs under centos system.</div>
<div>
<br></div><div>SurfaceCurvature run successfully with other data file, for example "canon_hist_half_resolution.nii".</div><div><br></div><div>Then, I tried it with my own datafile <span style="font-family:arial,sans-serif;font-size:14px">0846.nii and got such segmentation fault.</span></div>
<div><br></div><div><span style="font-family:arial,sans-serif;font-size:14px">Is it related to my datafile?</span></div><div><span style="font-family:arial,sans-serif;font-size:14px"><br></span></div><div><span style="font-family:arial,sans-serif;font-size:14px">Jingjing Zhang</span></div>
<div><br></div></div><div><div><div class="gmail_extra"><br><br><div class="gmail_quote">2013/8/6 brian avants <span dir="ltr"><<a href="mailto:stnava@gmail.com" target="_blank">stnava@gmail.com</a>></span><br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div dir="ltr">hi <div><br></div><div>this is really an ANTs question better dealt with here:</div><div><br></div><div><a href="http://sourceforge.net/p/advants/discussion/840261/" target="_blank">http://sourceforge.net/p/advants/discussion/840261/</a><br>
</div><div><br></div><div>questions about ANTs or ITK should involve some details:</div><div><br></div><div> * what is your specific platform?</div><div> </div><div> * what is the version of the software you are using?</div>
<div><br></div><div> * did you compile from source? </div><div><br></div><div> * did you try the same thing on other data?</div><div> </div><div>* did you try any other ANTs or ITK programs on this data?</div><div><br>
</div><div>and things like that. </div><div> </div></div><div class="gmail_extra"><br clear="all"><div><div><br></div>brian<br><div><br></div><div><br></div></div>
<br><br><div class="gmail_quote"><div><div>On Tue, Aug 6, 2013 at 11:12 AM, Õž§¾§ <span dir="ltr"><<a href="mailto:zhangjj831203@gmail.com" target="_blank">zhangjj831203@gmail.com</a>></span> wrote:<br></div>
</div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div>
<div dir="ltr"><div><div>I tried to use the SurfaceCurvature under LINUX but got the segmentation fault as follows:<br><br>[root@localhost surface]# ./SurfaceCurvature 0846.nii 0846out.nii 3 6<br> sigma 3<br>Segmentation fault<br>
<br></div>What's does that mean?<br><br></div>How to do with that?<br></div>
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