<div dir="ltr"><div>Hi,</div><div><br></div>I assume that line 40 is "connector->SetInput(reader->GetOutput());".<div><br></div><div>vtkImageData is derived from vtkDataObject, but you may need to downcast. Try calling vtkImageData::SafeDownCast [1] on the object returned by "reader->GetOutput()", before passing it to "connector->SetInput(..)".</div>
<div><br></div><div>If that doesn't work, you can try using "reader->GetOutput()->Print(std::cout);" to get some information on the object, to help with debugging.</div><div><br></div><div>[1] <a href="http://www.vtk.org/doc/nightly/html/classvtkImageData.html#ae4345f90722e82bec2f70f5d5a5b1f38">http://www.vtk.org/doc/nightly/html/classvtkImageData.html#ae4345f90722e82bec2f70f5d5a5b1f38</a><br>
<div><br></div><div>Enjoy,</div><div>Brian</div><div><div class="gmail_extra"><br><br><div class="gmail_quote">On Tue, Nov 19, 2013 at 5:00 AM, azmagillian <span dir="ltr"><<a href="mailto:xrysafenia.malliastolidou@gmail.com" target="_blank">xrysafenia.malliastolidou@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex">thanks for replying!<br>
i tried that but the below code gives me error: error C2664: ' cannot<br>
convert parameter 1 from 'vtkDataObject *' to 'vtkImageData *'<br>
d:\InsightToolkit-4.4.2\Modules\Bridge\VtkGlue\test\itkVTKImageToImageFilterTest.cxx<br>
40<br>
<br>
<br>
int itkVTKImageToImageFilterTest(int, char*[])<br>
{<br>
<div class="im"> typedef itk::Image<double, 2> ImageType;<br>
<br>
</div><div class="im"> typedef itk::VTKImageToImageFilter<ImageType> ConnectorType;<br>
<br>
</div> std::string inputFilename = "C:\\build_test2read\\test3vtk";<br>
<div class="im"><br>
// Get all data from the file<br>
vtkSmartPointer<vtkGenericDataObjectReader> reader =<br>
vtkSmartPointer<vtkGenericDataObjectReader>::New();<br>
reader->SetFileName(inputFilename.c_str());<br>
</div> reader->Update();<br>
<div class="im"><br>
<br>
ConnectorType::Pointer connector = ConnectorType::New();<br>
</div> connector->SetInput(reader->GetOutput());<br>
connector->Update();<br>
<br>
connector->GetOutput()->Print(std::cout);<br>
connector->GetImporter()->Print(std::cout);<br>
connector->GetExporter()->Print(std::cout);<br>
<br>
connector->Print(std::cout);<br>
<br>
return EXIT_SUCCESS;<br>
}<br>
<br>
<br>
<br>
<br>
<br>
2013/11/19 Jon Haitz Legarreta Gorroño [via ITK Insight Users] <<br>
<a href="mailto:ml-node%2Bs2283740n7584410h41@n2.nabble.com">ml-node+s2283740n7584410h41@n2.nabble.com</a>><br>
<div class="im"><br>
> Hi,<br>
> you should replace the vtkImageNoiseSource for a VTK file type reader. The<br>
> following [1] example ilustrates how to proceed.<br>
><br>
> In the example Matt pointed, the VTK image source is vtkImageNoiseSource,<br>
> which creates an image filled with noise.<br>
><br>
> So you would connect the output of your reader to the connector:<br>
><br>
> std::string inputFilename = argv[1];<br>
> // Get all data from the file<br>
> vtkSmartPointer<vtkGenericDataObjectReader> reader =<br>
> vtkSmartPointer<vtkGenericDataObjectReader>::New();<br>
> reader->SetFileName(inputFilename.c_str());<br>
><br>
> connector->SetInput(reader->GetOutput());<br>
><br>
><br>
> HTH,<br>
> JON HAITZ<br>
><br>
><br>
> [1] <a href="http://www.vtk.org/Wiki/VTK/Examples/Cxx/IO/GenericDataObjectReader" target="_blank">www.vtk.org/Wiki/VTK/Examples/Cxx/IO/GenericDataObjectReader</a><br>
><br>
><br>
><br>
><br>
</div>> On 19 November 2013 08:48, azmagillian <[hidden email]<<a href="http://user/SendEmail.jtp?type=node&node=7584410&i=0" target="_blank">http://user/SendEmail.jtp?type=node&node=7584410&i=0</a>><br>
<div><div class="h5">> > wrote:<br>
><br>
>> Matt thank you so much! I think that's what i need but for 3 dimensions<br>
>><br>
>> so below at the code i should change Image<double,2> to Image<double,3>?<br>
>> and where should i put my file .vtk input ??<br>
>><br>
>><br>
>> #include "itkVTKImageToImageFilter.h"<br>
>> 20<br>
>> 21 #include "vtkImageNoiseSource.h"<br>
>> 22 #include "vtkSmartPointer.h"<br>
>> 23<br>
>> 24 int itkVTKImageToImageFilterTest(int, char*[])<br>
>> 25 {<br>
>> 26 typedef itk::Image<double, 2> ImageType;<br>
>> 27 typedef vtkSmartPointer<vtkImageNoiseSource> VTKNoiseType;<br>
>> 28 typedef itk::VTKImageToImageFilter<ImageType> ConnectorType;<br>
>> 29<br>
>> 30 VTKNoiseType noise_source = VTKNoiseType::New();<br>
>> 31 noise_source->SetWholeExtent(0,20,0,20,0,0);<br>
>> 32 noise_source->SetMinimum(0.0);<br>
>> 33 noise_source->SetMaximum(1.0);<br>
>> 34 noise_source->Update();<br>
>> 35<br>
>> 36 ConnectorType::Pointer connector = ConnectorType::New();<br>
>> 37 connector->SetInput(noise_source->GetOutput());<br>
>> 38 connector->Update();<br>
>> 39<br>
>> 40 connector->GetOutput()->Print(std::cout);<br>
>> 41 connector->GetImporter()->Print(std::cout);<br>
>> 42 connector->GetExporter()->Print(std::cout);<br>
>> 43<br>
>> 44 connector->Print(std::cout);<br>
>> 45<br>
>> 46 return EXIT_SUCCESS;<br>
>> 47 }<br>
>><br>
>><br>
>> 2013/11/18 Matt McCormick-2 [via ITK Insight Users] <<br>
</div></div>>> [hidden email] <<a href="http://user/SendEmail.jtp?type=node&node=7584410&i=1" target="_blank">http://user/SendEmail.jtp?type=node&node=7584410&i=1</a>>><br>
<div><div class="h5">>><br>
>><br>
>> > Hi,<br>
>> ><br>
>> > Code to convert a VTK ImageData to an ITK Image can be found in the<br>
>> > ITKVtkGlue module [1].<br>
>> ><br>
>> > Hope this helps,<br>
>> > Matt<br>
>> ><br>
>> > [1]<br>
>> ><br>
>> <a href="http://itk.org/gitweb?p=ITK.git;a=blob;f=Modules/Bridge/VtkGlue/test/itkVTKImageToImageFilterTest.cxx;h=b22c9e8685cf26290249554d58232d3d14b24a97;hb=HEAD" target="_blank">http://itk.org/gitweb?p=ITK.git;a=blob;f=Modules/Bridge/VtkGlue/test/itkVTKImageToImageFilterTest.cxx;h=b22c9e8685cf26290249554d58232d3d14b24a97;hb=HEAD</a><br>
>> ><br>
>> > On Mon, Nov 18, 2013 at 5:14 AM, azmagillian<br>
>> > <[hidden email] <<a href="http://user/SendEmail.jtp?type=node&node=7584406&i=0" target="_blank">http://user/SendEmail.jtp?type=node&node=7584406&i=0</a>>><br>
>><br>
>> > wrote:<br>
>> ><br>
>> > > Jon you said you made a filter to "transform your VTK data object to<br>
>> an<br>
>> > > ITK image so that you can use ITK's segmentation filter."<br>
>> > ><br>
>> > > Where can i find it?<br>
>> > ><br>
>> > > Thanks!!!<br>
>> > ><br>
>> > ><br>
>> > > 2013/11/15 Jon Haitz Legarreta Gorroño [via ITK Insight Users] <<br>
>> > > [hidden email] <<a href="http://user/SendEmail.jtp?type=node&node=7584406&i=1" target="_blank">http://user/SendEmail.jtp?type=node&node=7584406&i=1</a><br>
>> >><br>
>><br>
>> > ><br>
>> > >> You should either use the filter Hans mentioned or the one I did to<br>
>> > >> transform your VTK data object to an ITK image so that you can use<br>
>> > ITK's<br>
>> > >> segmentation filter.<br>
>> > >><br>
>> > >> JON HAITZ<br>
>> > >><br>
>> > >><br>
>> > >><br>
>> > >> On 15 November 2013 10:19, azmagillian <[hidden email]<<br>
>> > <a href="http://user/SendEmail.jtp?type=node&node=7584387&i=0" target="_blank">http://user/SendEmail.jtp?type=node&node=7584387&i=0</a>><br>
>> > >> > wrote:<br>
>> > >><br>
>> > >>> Thank you all again !<br>
>> > >>><br>
>> > >>> As i figured the first step would be to apply the Conncted Threshold<br>
>> > Image<br>
>> > >>> Filter to 3d input<br>
>> > >>><br>
>> > >>> what changes should i make to the code?<br>
>> > >>> can i use as an input .vtk file (i converted .obj file to .vtk ) ?<br>
>> > >>><br>
>> > >>><br>
>> > >>> 2013/11/14 Jon Haitz Legarreta Gorroño [via ITK Insight Users] <<br>
>> > >>> [hidden email] <<br>
>> <a href="http://user/SendEmail.jtp?type=node&node=7584387&i=1" target="_blank">http://user/SendEmail.jtp?type=node&node=7584387&i=1</a>>><br>
>> ><br>
>> > >>><br>
>> > >>><br>
>> > >>> > Hi there,<br>
>> > >>> > you can find ITK's region growing segmentation filters here:<br>
>> > >>> ><br>
>> > <a href="http://www.itk.org/Doxygen/html/group__RegionGrowingSegmentation.html" target="_blank">http://www.itk.org/Doxygen/html/group__RegionGrowingSegmentation.html</a><br>
>> > >>> ><br>
>> > >>> > You will find some guidelines to use them in the ITK SW guide:<br>
>> > >>> > <a href="http://www.itk.org/ItkSoftwareGuide.pdf" target="_blank">http://www.itk.org/ItkSoftwareGuide.pdf</a> (not up-to-date, but<br>
>> there<br>
>> > is<br>
>> > >>> an<br>
>> > >>> > ongoing effort to make it again).<br>
>> > >>> ><br>
>> > >>> > HTH,<br>
>> > >>> > JON HAITZ<br>
>> > >>> ><br>
>> > >>> ><br>
>> > >>> > On 14 November 2013 15:09, azmagillian <[hidden email]<<br>
>> > >>> <a href="http://user/SendEmail.jtp?type=node&node=7584364&i=0" target="_blank">http://user/SendEmail.jtp?type=node&node=7584364&i=0</a>><br>
>> > >>><br>
>> > >>> > > wrote:<br>
>> > >>> ><br>
>> > >>> >> Hans thanks for replying!<br>
>> > >>> >><br>
>> > >>> >> right now i have successfully read and display my .obj with vtk<br>
>> > >>> >><br>
>> > >>> >> for next step what should i do to use on this an itk filter ?<br>
>> > >>> >><br>
>> > >>> >> also is there code for seeded 3D region growing segmentation ?<br>
>> > >>> >><br>
>> > >>> >> i didn't get how to use this code<br>
>> > >>> >> <a href="http://insight-journal.org/browse/publication/178" target="_blank">http://insight-journal.org/browse/publication/178</a><br>
>> > >>> >><br>
>> > >>> >><br>
>> > >>> >> 2013/11/14 Johnson, Hans J [via ITK Insight Users] <<br>
>> > >>> >> [hidden email] <<br>
>> > <a href="http://user/SendEmail.jtp?type=node&node=7584364&i=1" target="_blank">http://user/SendEmail.jtp?type=node&node=7584364&i=1</a>>><br>
>> > >>><br>
>> > >>> >><br>
>> > >>> >><br>
>> > >>> >> > There is some code that can allow conversion. It is not fully<br>
>> > >>> >> documented,<br>
>> > >>> >> > but last time I tried, it worked well.<br>
>> > >>> >> ><br>
>> > >>> >> > <a href="http://insight-journal.org/browse/publication/178" target="_blank">http://insight-journal.org/browse/publication/178</a><br>
>> > >>> >> ><br>
>> > >>> >> ><br>
>> > >>> >> > Hans<br>
>> > >>> >> ><br>
>> > >>> >> ><br>
>> > >>> >> ><br>
>> > >>> >> > On 11/14/13, 6:06 AM, "azmagillian" <[hidden email]<<br>
>> > >>> >> <a href="http://user/SendEmail.jtp?type=node&node=7584358&i=0" target="_blank">http://user/SendEmail.jtp?type=node&node=7584358&i=0</a>>><br>
>> > >>> >><br>
>> > >>> >> ><br>
>> > >>> >> > wrote:<br>
>> > >>> >> ><br>
>> > >>> >> > >Dear, ITK users , thanks in advance for your help<br>
>> > >>> >> > ><br>
>> > >>> >> > >I want to perform 3d segmentation of a .obj file<br>
>> > >>> >> > >my thought was to use connectedthreshold but there is not an<br>
>> > example<br>
>> > >>> >> for<br>
>> > >>> >> > >3d<br>
>> > >>> >> > >then i tried to use confidenceconnected threshold but i can't<br>
>> > give<br>
>> > >>> a.<br>
>> > >>> >> obj<br>
>> > >>> >> > >as<br>
>> > >>> >> > >input<br>
>> > >>> >> > ><br>
>> > >>> >> > >any ideas ?<br>
>> > >>> >> > >is there a way to convert .obj to a format suitable for itk<br>
>> > filters?<br>
>> > >>> >> > ><br>
>> > >>> >> > ><br>
>> > >>> >> > ><br>
>> > >>> >> > >--<br>
>> > >>> >> > >View this message in context:<br>
>> > >>> >> > ><br>
>> > >>> >> ><br>
>> > >>> >><br>
>> > >>><br>
>> ><br>
>> <a href="http://itk-insight-users.2283740.n2.nabble.com/3d-SEGMENTATION-OF-OBJ-FILE" target="_blank">http://itk-insight-users.2283740.n2.nabble.com/3d-SEGMENTATION-OF-OBJ-FILE</a><br>
>> > >>> >> > >-tp7584357.html<br>
>> > >>> >> > >Sent from the ITK Insight Users mailing list archive at<br>
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>> > >>> >> > >_____________________________________<br>
>> > >>> >> > >Powered by <a href="http://www.kitware.com" target="_blank">www.kitware.com</a><br>
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>> > >>> >><br>
>> > >>> >><br>
>> > >>> >><br>
>> > >>> >> --<br>
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>> > >>> ><br>
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>> > > Kitware offers ITK Training Courses, for more information visit:<br>
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>> > > Please keep messages on-topic and check the ITK FAQ at:<br>
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>> > Kitware offers ITK Training Courses, for more information visit:<br>
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</div></div>>> > To unsubscribe from 3d SEGMENTATION OF .OBJ FILE, click here< > .<br>
<div class="im">>> > NAML<<br>
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>> ><br>
>> ><br>
>><br>
>><br>
>><br>
>><br>
>> --<br>
>> View this message in context:<br>
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>> Sent from the ITK Insight Users mailing list archive at Nabble.com.<br>
>> _____________________________________<br>
>> Powered by <a href="http://www.kitware.com" target="_blank">www.kitware.com</a><br>
>><br>
>> Visit other Kitware open-source projects at<br>
>> <a href="http://www.kitware.com/opensource/opensource.html" target="_blank">http://www.kitware.com/opensource/opensource.html</a><br>
>><br>
>> Kitware offers ITK Training Courses, for more information visit:<br>
>> <a href="http://www.kitware.com/products/protraining.php" target="_blank">http://www.kitware.com/products/protraining.php</a><br>
>><br>
>> Please keep messages on-topic and check the ITK FAQ at:<br>
>> <a href="http://www.itk.org/Wiki/ITK_FAQ" target="_blank">http://www.itk.org/Wiki/ITK_FAQ</a><br>
>><br>
>> Follow this link to subscribe/unsubscribe:<br>
>> <a href="http://www.itk.org/mailman/listinfo/insight-users" target="_blank">http://www.itk.org/mailman/listinfo/insight-users</a><br>
>><br>
><br>
><br>
</div><div class="im">> _____________________________________<br>
> Powered by <a href="http://www.kitware.com" target="_blank">www.kitware.com</a><br>
><br>
> Visit other Kitware open-source projects at<br>
> <a href="http://www.kitware.com/opensource/opensource.html" target="_blank">http://www.kitware.com/opensource/opensource.html</a><br>
><br>
> Kitware offers ITK Training Courses, for more information visit:<br>
> <a href="http://www.kitware.com/products/protraining.php" target="_blank">http://www.kitware.com/products/protraining.php</a><br>
><br>
> Please keep messages on-topic and check the ITK FAQ at:<br>
> <a href="http://www.itk.org/Wiki/ITK_FAQ" target="_blank">http://www.itk.org/Wiki/ITK_FAQ</a><br>
><br>
> Follow this link to subscribe/unsubscribe:<br>
> <a href="http://www.itk.org/mailman/listinfo/insight-users" target="_blank">http://www.itk.org/mailman/listinfo/insight-users</a><br>
><br>
><br>
> ------------------------------<br>
> If you reply to this email, your message will be added to the discussion<br>
> below:<br>
><br>
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> .<br>
> NAML<<a href="http://itk-insight-users.2283740.n2.nabble.com/template/NamlServlet.jtp?macro=macro_viewer&id=instant_html%21nabble%3Aemail.naml&base=nabble.naml.namespaces.BasicNamespace-nabble.view.web.template.NabbleNamespace-nabble.naml.namespaces.BasicNamespace-nabble.view.web.template.NabbleNamespace-nabble.naml.namespaces.BasicNamespace-nabble.view.web.template.NabbleNamespace-nabble.naml.namespaces.BasicNamespace-nabble.view.web.template.NabbleNamespace-nabble.naml.namespaces.BasicNamespace-nabble.view.web.template.NabbleNamespace-nabble.naml.namespaces.BasicNamespace-nabble.view.web.template.NabbleNamespace-nabble.naml.namespaces.BasicNamespace-nabble.view.web.template.NabbleNamespace-nabble.naml.namespaces.BasicNamespace-nabble.view.web.template.NabbleNamespace-nabble.view.web.template.NodeNamespace&breadcrumbs=notify_subscribers%21nabble%3Aemail.naml-instant_emails%21nabble%3Aemail.naml-send_instant_email%21nabble%3Aemail.naml" target="_blank">http://itk-insight-users.2283740.n2.nabble.com/template/NamlServlet.jtp?macro=macro_viewer&id=instant_html%21nabble%3Aemail.naml&base=nabble.naml.namespaces.BasicNamespace-nabble.view.web.template.NabbleNamespace-nabble.naml.namespaces.BasicNamespace-nabble.view.web.template.NabbleNamespace-nabble.naml.namespaces.BasicNamespace-nabble.view.web.template.NabbleNamespace-nabble.naml.namespaces.BasicNamespace-nabble.view.web.template.NabbleNamespace-nabble.naml.namespaces.BasicNamespace-nabble.view.web.template.NabbleNamespace-nabble.naml.namespaces.BasicNamespace-nabble.view.web.template.NabbleNamespace-nabble.naml.namespaces.BasicNamespace-nabble.view.web.template.NabbleNamespace-nabble.naml.namespaces.BasicNamespace-nabble.view.web.template.NabbleNamespace-nabble.view.web.template.NodeNamespace&breadcrumbs=notify_subscribers%21nabble%3Aemail.naml-instant_emails%21nabble%3Aemail.naml-send_instant_email%21nabble%3Aemail.naml</a>><br>
><br>
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<br>
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</div>View this message in context: <a href="http://itk-insight-users.2283740.n2.nabble.com/3d-SEGMENTATION-OF-OBJ-FILE-tp7584357p7584411.html" target="_blank">http://itk-insight-users.2283740.n2.nabble.com/3d-SEGMENTATION-OF-OBJ-FILE-tp7584357p7584411.html</a><br>
<div class=""><div class="h5">Sent from the ITK Insight Users mailing list archive at Nabble.com.<br>
_____________________________________<br>
Powered by <a href="http://www.kitware.com" target="_blank">www.kitware.com</a><br>
<br>
Visit other Kitware open-source projects at<br>
<a href="http://www.kitware.com/opensource/opensource.html" target="_blank">http://www.kitware.com/opensource/opensource.html</a><br>
<br>
Kitware offers ITK Training Courses, for more information visit:<br>
<a href="http://www.kitware.com/products/protraining.php" target="_blank">http://www.kitware.com/products/protraining.php</a><br>
<br>
Please keep messages on-topic and check the ITK FAQ at:<br>
<a href="http://www.itk.org/Wiki/ITK_FAQ" target="_blank">http://www.itk.org/Wiki/ITK_FAQ</a><br>
<br>
Follow this link to subscribe/unsubscribe:<br>
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</div></div></blockquote></div><br><br clear="all"><div><br></div>-- <br>Brian Helba<br>Medical Imaging<br>Kitware, Inc.<br>
</div></div></div></div>