ITK  5.0.0
Insight Segmentation and Registration Toolkit
Public Types | Public Member Functions | Static Public Member Functions | Protected Member Functions | Private Member Functions | Private Attributes | List of all members
itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType > Class Template Reference

#include <itkStripTsImageFilter.h>

+ Inheritance diagram for itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >:
+ Collaboration diagram for itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >:

Detailed Description

template<class TImageType, class TAtlasImageType, class TAtlasLabelType>
class itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >

composite ITK filter for automatic skull-stripping

This ITK filter performs automatic skull stripping for 3D medical images

It requires 3 inputs: SetInput() SetAtlasImage() SetAtlasBrainMask() and it outputs the brain mask for the patient image

Warning
images have to be 3D

to be done: check if all required inputs are set and if images are 3D

version: 1.0 date: 20.04.2012 initial release

Stefan Bauer Institute for Surgical Technology and Biomechanics, University of Bern stefan.bauer at istb.unibe.ch

This code is from the Insight Journal paper: "A Skull-Stripping Filter for ITK" Bauer S., Fejes T., Reyes M. http://hdl.handle.net/10380/3353 Based on the paper: "Skull-stripping for Tumor-bearing Brain Images". Stefan Bauer, Lutz-Peter Nolte, and Mauricio Reyes. In Annual Meeting of the Swiss Society for Biomedical Engineering, page 2, Bern, April 2011..

Definition at line 94 of file itkStripTsImageFilter.h.

Public Types

using AtlasImageConstPointer = typename AtlasImageType::ConstPointer
 
using AtlasImagePointer = typename AtlasImageType::Pointer
 
using AtlasImageType = TAtlasImageType
 
using AtlasLabelConstPointer = typename AtlasLabelType::ConstPointer
 
using AtlasLabelPointer = typename AtlasLabelType::Pointer
 
using AtlasLabelType = TAtlasLabelType
 
using ConstPointer = SmartPointer< const Self >
 
using ImageConstPointer = typename ImageType::ConstPointer
 
using ImagePointer = typename ImageType::Pointer
 
using ImageType = TImageType
 
using Pointer = SmartPointer< Self >
 
using ProgressPointer = typename ProgressAccumulator::Pointer
 
using Self = StripTsImageFilter
 
using Superclass = ImageToImageFilter< TImageType, TAtlasLabelType >
 
- Public Types inherited from itk::ImageToImageFilter< TImageType, TAtlasLabelType >
using ConstPointer = SmartPointer< const Self >
 
using InputImageConstPointer = typename InputImageType::ConstPointer
 
using InputImagePixelType = typename InputImageType::PixelType
 
using InputImagePointer = typename InputImageType::Pointer
 
using InputImageRegionType = typename InputImageType::RegionType
 
using InputImageType = TImageType
 
using OutputImagePixelType = typename Superclass::OutputImagePixelType
 
using OutputImageRegionType = typename Superclass::OutputImageRegionType
 
using Pointer = SmartPointer< Self >
 
using Self = ImageToImageFilter
 
using Superclass = ImageSource< TAtlasLabelType >
 
- Public Types inherited from itk::ImageSource< TAtlasLabelType >
using ConstPointer = SmartPointer< const Self >
 
using DataObjectIdentifierType = Superclass::DataObjectIdentifierType
 
using DataObjectPointer = DataObject::Pointer
 
using DataObjectPointerArraySizeType = Superclass::DataObjectPointerArraySizeType
 
using OutputImagePixelType = typename OutputImageType::PixelType
 
using OutputImagePointer = typename OutputImageType::Pointer
 
using OutputImageRegionType = typename OutputImageType::RegionType
 
using OutputImageType = TAtlasLabelType
 
using Pointer = SmartPointer< Self >
 
using Self = ImageSource
 
using Superclass = ProcessObject
 
- Public Types inherited from itk::ProcessObject
using ConstPointer = SmartPointer< const Self >
 
using DataObjectIdentifierType = DataObject::DataObjectIdentifierType
 
using DataObjectPointer = DataObject::Pointer
 
using DataObjectPointerArray = std::vector< DataObjectPointer >
 
using DataObjectPointerArraySizeType = DataObjectPointerArray::size_type
 
using MultiThreaderType = MultiThreaderBase
 
using NameArray = std::vector< DataObjectIdentifierType >
 
using Pointer = SmartPointer< Self >
 
using Self = ProcessObject
 
using Superclass = Object
 
- Public Types inherited from itk::Object
using ConstPointer = SmartPointer< const Self >
 
using Pointer = SmartPointer< Self >
 
using Self = Object
 
using Superclass = LightObject
 
- Public Types inherited from itk::LightObject
using ConstPointer = SmartPointer< const Self >
 
using Pointer = SmartPointer< Self >
 
using Self = LightObject
 

Public Member Functions

virtual ::itk::LightObject::Pointer CreateAnother () const
 
virtual const char * GetNameOfClass () const
 
const std::string & GetTimerReport () const
 
void PrintSelf (std::ostream &os, Indent indent) const override
 
void SetAtlasBrainMask (const TAtlasLabelType *ptr)
 
void SetAtlasImage (const TAtlasImageType *ptr)
 
- Public Member Functions inherited from itk::ImageToImageFilter< TImageType, TAtlasLabelType >
const InputImageTypeGetInput () const
 
const InputImageTypeGetInput (unsigned int idx) const
 
void PopBackInput () override
 
void PopFrontInput () override
 
virtual void PushBackInput (const InputImageType *image)
 
virtual void PushFrontInput (const InputImageType *image)
 
virtual void SetInput (const InputImageType *image)
 
virtual void SetInput (unsigned int, const TImageType *image)
 
virtual void SetCoordinateTolerance (double _arg)
 
virtual double GetCoordinateTolerance () const
 
virtual void SetDirectionTolerance (double _arg)
 
virtual double GetDirectionTolerance () const
 
- Public Member Functions inherited from itk::ImageSource< TAtlasLabelType >
OutputImageTypeGetOutput (unsigned int idx)
 
OutputImageTypeGetOutput ()
 
const OutputImageTypeGetOutput () const
 
virtual void GraftOutput (DataObject *output)
 
virtual void GraftOutput (const DataObjectIdentifierType &key, DataObject *output)
 
virtual void GraftNthOutput (unsigned int idx, DataObject *output)
 
ProcessObject::DataObjectPointer MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx) override
 
ProcessObject::DataObjectPointer MakeOutput (const ProcessObject::DataObjectIdentifierType &) override
 
- Public Member Functions inherited from itk::ProcessObject
virtual void AbortGenerateDataOff ()
 
virtual void AbortGenerateDataOn ()
 
virtual void EnlargeOutputRequestedRegion (DataObject *)
 
virtual const bool & GetAbortGenerateData () const
 
DataObjectPointerArray GetIndexedInputs ()
 
DataObjectPointerArray GetIndexedOutputs ()
 
NameArray GetInputNames () const
 
DataObjectPointerArray GetInputs ()
 
MultiThreaderTypeGetMultiThreader () const
 
DataObjectPointerArraySizeType GetNumberOfIndexedInputs () const
 
DataObjectPointerArraySizeType GetNumberOfIndexedOutputs () const
 
DataObjectPointerArraySizeType GetNumberOfInputs () const
 
DataObjectPointerArraySizeType GetNumberOfOutputs () const
 
virtual
DataObjectPointerArraySizeType 
GetNumberOfValidRequiredInputs () const
 
NameArray GetOutputNames () const
 
DataObjectPointerArray GetOutputs ()
 
virtual const float & GetProgress () const
 
NameArray GetRequiredInputNames () const
 
bool HasInput (const DataObjectIdentifierType &key) const
 
bool HasOutput (const DataObjectIdentifierType &key) const
 
virtual void PrepareOutputs ()
 
virtual void PropagateRequestedRegion (DataObject *output)
 
virtual void ResetPipeline ()
 
virtual void SetAbortGenerateData (bool _arg)
 
void SetMultiThreader (MultiThreaderType *threader)
 
virtual void Update ()
 
virtual void UpdateLargestPossibleRegion ()
 
virtual void UpdateOutputData (DataObject *output)
 
virtual void UpdateOutputInformation ()
 
void UpdateProgress (float progress)
 
virtual void SetReleaseDataFlag (bool flag)
 
virtual bool GetReleaseDataFlag () const
 
void ReleaseDataFlagOn ()
 
void ReleaseDataFlagOff ()
 
virtual void SetReleaseDataBeforeUpdateFlag (bool _arg)
 
virtual const bool & GetReleaseDataBeforeUpdateFlag () const
 
virtual void ReleaseDataBeforeUpdateFlagOn ()
 
virtual void ReleaseDataBeforeUpdateFlagOff ()
 
virtual void SetNumberOfWorkUnits (ThreadIdType _arg)
 
virtual const ThreadIdTypeGetNumberOfWorkUnits () const
 
- Public Member Functions inherited from itk::Object
unsigned long AddObserver (const EventObject &event, Command *)
 
unsigned long AddObserver (const EventObject &event, Command *) const
 
virtual void DebugOff () const
 
virtual void DebugOn () const
 
CommandGetCommand (unsigned long tag)
 
bool GetDebug () const
 
MetaDataDictionaryGetMetaDataDictionary ()
 
const MetaDataDictionaryGetMetaDataDictionary () const
 
virtual ModifiedTimeType GetMTime () const
 
virtual const TimeStampGetTimeStamp () const
 
bool HasObserver (const EventObject &event) const
 
void InvokeEvent (const EventObject &)
 
void InvokeEvent (const EventObject &) const
 
virtual void Modified () const
 
void Register () const override
 
void RemoveAllObservers ()
 
void RemoveObserver (unsigned long tag)
 
void SetDebug (bool debugFlag) const
 
void SetReferenceCount (int) override
 
void UnRegister () const noexceptoverride
 
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
 
void SetMetaDataDictionary (MetaDataDictionary &&rrhs)
 
virtual void SetObjectName (std::string _arg)
 
virtual const std::string & GetObjectName () const
 
- Public Member Functions inherited from itk::LightObject
virtual void Delete ()
 
virtual int GetReferenceCount () const
 
 itkCloneMacro (Self)
 
void Print (std::ostream &os, Indent indent=0) const
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from itk::Object
static bool GetGlobalWarningDisplay ()
 
static void GlobalWarningDisplayOff ()
 
static void GlobalWarningDisplayOn ()
 
static Pointer New ()
 
static void SetGlobalWarningDisplay (bool flag)
 
- Static Public Member Functions inherited from itk::LightObject
static void BreakOnError ()
 
static Pointer New ()
 

Protected Member Functions

void GenerateData () override
 
 StripTsImageFilter ()
 
 ~StripTsImageFilter ()
 
- Protected Member Functions inherited from itk::ImageToImageFilter< TImageType, TAtlasLabelType >
virtual void CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)
 
virtual void CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)
 
void GenerateInputRequestedRegion () override
 
 ImageToImageFilter ()
 
void PrintSelf (std::ostream &os, Indent indent) const override
 
void VerifyInputInformation () ITKv5_CONST override
 
 ~ImageToImageFilter () override
 
void PushBackInput (const DataObject *input) override
 
void PushFrontInput (const DataObject *input) override
 
- Protected Member Functions inherited from itk::ImageSource< TAtlasLabelType >
virtual void AfterThreadedGenerateData ()
 
virtual void AllocateOutputs ()
 
virtual void BeforeThreadedGenerateData ()
 
void ClassicMultiThread (ThreadFunctionType callbackFunction)
 
void GenerateData () override
 
virtual const
ImageRegionSplitterBase
GetImageRegionSplitter () const
 
 ImageSource ()
 
virtual unsigned int SplitRequestedRegion (unsigned int i, unsigned int pieces, OutputImageRegionType &splitRegion)
 
 ~ImageSource () override=default
 
virtual void ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId)
 
virtual void DynamicThreadedGenerateData (const OutputImageRegionType &outputRegionForThread)
 
virtual bool GetDynamicMultiThreading () const
 
virtual void SetDynamicMultiThreading (bool _arg)
 
virtual void DynamicMultiThreadingOn ()
 
virtual void DynamicMultiThreadingOff ()
 
- Protected Member Functions inherited from itk::ProcessObject
virtual void AddInput (DataObject *input)
 
void AddOptionalInputName (const DataObjectIdentifierType &)
 
void AddOptionalInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
 
virtual void AddOutput (DataObject *output)
 
bool AddRequiredInputName (const DataObjectIdentifierType &)
 
bool AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
 
virtual void CacheInputReleaseDataFlags ()
 
virtual void GenerateOutputInformation ()
 
virtual void GenerateOutputRequestedRegion (DataObject *output)
 
DataObjectGetInput (const DataObjectIdentifierType &key)
 
const DataObjectGetInput (const DataObjectIdentifierType &key) const
 
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredInputs () const
 
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredOutputs () const
 
bool IsIndexedInputName (const DataObjectIdentifierType &) const
 
bool IsIndexedOutputName (const DataObjectIdentifierType &) const
 
bool IsRequiredInputName (const DataObjectIdentifierType &) const
 
DataObjectPointerArraySizeType MakeIndexFromInputName (const DataObjectIdentifierType &name) const
 
DataObjectPointerArraySizeType MakeIndexFromOutputName (const DataObjectIdentifierType &name) const
 
DataObjectIdentifierType MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const
 
DataObjectIdentifierType MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const
 
 ProcessObject ()
 
virtual void PropagateResetPipeline ()
 
virtual void ReleaseInputs ()
 
virtual void RemoveInput (const DataObjectIdentifierType &key)
 
virtual void RemoveInput (DataObjectPointerArraySizeType)
 
virtual void RemoveOutput (const DataObjectIdentifierType &key)
 
virtual void RemoveOutput (DataObjectPointerArraySizeType idx)
 
bool RemoveRequiredInputName (const DataObjectIdentifierType &)
 
virtual void RestoreInputReleaseDataFlags ()
 
virtual void SetInput (const DataObjectIdentifierType &key, DataObject *input)
 
virtual void SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)
 
virtual void SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)
 
void SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
 
void SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
 
virtual void SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
 
virtual void SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
 
virtual void SetOutput (const DataObjectIdentifierType &key, DataObject *output)
 
virtual void SetPrimaryInput (DataObject *input)
 
virtual void SetPrimaryOutput (DataObject *output)
 
void SetRequiredInputNames (const NameArray &)
 
virtual void VerifyPreconditions () ITKv5_CONST
 
 ~ProcessObject () override
 
DataObjectGetInput (DataObjectPointerArraySizeType idx)
 
const DataObjectGetInput (DataObjectPointerArraySizeType idx) const
 
DataObjectGetPrimaryInput ()
 
const DataObjectGetPrimaryInput () const
 
virtual void SetPrimaryInputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryInputName () const
 
DataObjectGetOutput (const DataObjectIdentifierType &key)
 
const DataObjectGetOutput (const DataObjectIdentifierType &key) const
 
virtual void SetPrimaryOutputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryOutputName () const
 
DataObjectGetOutput (DataObjectPointerArraySizeType idx)
 
const DataObjectGetOutput (DataObjectPointerArraySizeType idx) const
 
DataObjectGetPrimaryOutput ()
 
const DataObjectGetPrimaryOutput () const
 
- Protected Member Functions inherited from itk::Object
 Object ()
 
bool PrintObservers (std::ostream &os, Indent indent) const
 
virtual void SetTimeStamp (const TimeStamp &time)
 
 ~Object () override
 
- Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer InternalClone () const
 
 LightObject ()
 
virtual void PrintHeader (std::ostream &os, Indent indent) const
 
virtual void PrintTrailer (std::ostream &os, Indent indent) const
 
virtual ~LightObject ()
 

Private Member Functions

void AffineRegistration ()
 
void BinaryErosion ()
 
void DownsampleImage ()
 
void InversePyramidFilter ()
 
void LevelSetRefinement (int isoSpacing)
 
void MultiResLevelSet ()
 
void PyramidFilter (int isoSpacing)
 
void RescaleImages ()
 
void RigidRegistration ()
 
void UpsampleLabels ()
 

Private Attributes

AtlasImagePointer m_AtlasImage
 
AtlasLabelPointer m_AtlasLabels
 
ImagePointer m_PatientImage
 
ProgressPointer m_Progress
 
TimeProbesCollectorBase m_Timer
 
std::string m_TimerReport
 

Additional Inherited Members

- Static Public Attributes inherited from itk::ImageToImageFilter< TImageType, TAtlasLabelType >
static constexpr unsigned int InputImageDimension
 
static constexpr unsigned int OutputImageDimension
 
- Static Public Attributes inherited from itk::ImageSource< TAtlasLabelType >
static constexpr unsigned int OutputImageDimension
 
- Protected Types inherited from itk::ImageToImageFilter< TImageType, TAtlasLabelType >
using InputToOutputRegionCopierType = ImageToImageFilterDetail::ImageRegionCopier< Self::OutputImageDimension, Self::InputImageDimension >
 
using OutputToInputRegionCopierType = ImageToImageFilterDetail::ImageRegionCopier< Self::InputImageDimension, Self::OutputImageDimension >
 
- Static Protected Member Functions inherited from itk::ImageSource< TAtlasLabelType >
static const
ImageRegionSplitterBase
GetGlobalDefaultSplitter ()
 
static
ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION 
ThreaderCallback (void *arg)
 
- Protected Attributes inherited from itk::ImageSource< TAtlasLabelType >
bool m_DynamicMultiThreading
 
- Protected Attributes inherited from itk::ProcessObject
TimeStamp m_OutputInformationMTime
 
bool m_Updating
 
- Protected Attributes inherited from itk::LightObject
std::atomic< int > m_ReferenceCount
 

Member Typedef Documentation

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
using itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::AtlasImageConstPointer = typename AtlasImageType::ConstPointer

Definition at line 122 of file itkStripTsImageFilter.h.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
using itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::AtlasImagePointer = typename AtlasImageType::Pointer

Definition at line 121 of file itkStripTsImageFilter.h.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
using itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::AtlasImageType = TAtlasImageType

Definition at line 120 of file itkStripTsImageFilter.h.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
using itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::AtlasLabelConstPointer = typename AtlasLabelType::ConstPointer

Definition at line 126 of file itkStripTsImageFilter.h.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
using itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::AtlasLabelPointer = typename AtlasLabelType::Pointer

Definition at line 125 of file itkStripTsImageFilter.h.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
using itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::AtlasLabelType = TAtlasLabelType

Definition at line 124 of file itkStripTsImageFilter.h.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
using itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::ConstPointer = SmartPointer<const Self>

Definition at line 104 of file itkStripTsImageFilter.h.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
using itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::ImageConstPointer = typename ImageType::ConstPointer

Definition at line 118 of file itkStripTsImageFilter.h.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
using itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::ImagePointer = typename ImageType::Pointer

Definition at line 117 of file itkStripTsImageFilter.h.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
using itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::ImageType = TImageType

Definition at line 116 of file itkStripTsImageFilter.h.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
using itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::Pointer = SmartPointer<Self>

Definition at line 103 of file itkStripTsImageFilter.h.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
using itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::ProgressPointer = typename ProgressAccumulator::Pointer

Definition at line 128 of file itkStripTsImageFilter.h.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
using itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::Self = StripTsImageFilter

Definition at line 101 of file itkStripTsImageFilter.h.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
using itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::Superclass = ImageToImageFilter<TImageType,TAtlasLabelType>

Definition at line 102 of file itkStripTsImageFilter.h.

Constructor & Destructor Documentation

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::StripTsImageFilter ( )
protected
template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::~StripTsImageFilter ( )
protected

Member Function Documentation

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
void itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::AffineRegistration ( )
private
template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
void itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::BinaryErosion ( )
private
template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
virtual::itk::LightObject::Pointer itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::CreateAnother ( ) const
virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::Object.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
void itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::DownsampleImage ( )
private
template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
void itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::GenerateData ( void  )
overrideprotectedvirtual

This method causes the filter to generate its output.

Reimplemented from itk::ProcessObject.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
virtual const char* itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::GetNameOfClass ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from itk::ImageToImageFilter< TImageType, TAtlasLabelType >.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
const std::string& itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::GetTimerReport ( ) const
inline

Definition at line 133 of file itkStripTsImageFilter.h.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
void itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::InversePyramidFilter ( )
private
template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
void itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::LevelSetRefinement ( int  isoSpacing)
private
template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
void itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::MultiResLevelSet ( )
private
template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
static Pointer itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::New ( )
static
template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
void itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
overridevirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::ProcessObject.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
void itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::PyramidFilter ( int  isoSpacing)
private
template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
void itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::RescaleImages ( )
private
template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
void itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::RigidRegistration ( )
private
template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
void itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::SetAtlasBrainMask ( const TAtlasLabelType *  ptr)
template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
void itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::SetAtlasImage ( const TAtlasImageType *  ptr)
template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
void itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::UpsampleLabels ( )
private

Member Data Documentation

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
AtlasImagePointer itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::m_AtlasImage
private

Definition at line 149 of file itkStripTsImageFilter.h.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
AtlasLabelPointer itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::m_AtlasLabels
private

Definition at line 150 of file itkStripTsImageFilter.h.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
ImagePointer itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::m_PatientImage
private

Definition at line 148 of file itkStripTsImageFilter.h.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
ProgressPointer itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::m_Progress
private

Definition at line 151 of file itkStripTsImageFilter.h.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
TimeProbesCollectorBase itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::m_Timer
private

Definition at line 152 of file itkStripTsImageFilter.h.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
std::string itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::m_TimerReport
private

Definition at line 153 of file itkStripTsImageFilter.h.


The documentation for this class was generated from the following file: