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itkBioGeneNetwork.h

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00001 /*========================================================================= 00002 00003 Program: Insight Segmentation & Registration Toolkit 00004 Module: $RCSfile: itkBioGeneNetwork.h,v $ 00005 Language: C++ 00006 Date: $Date: 2003/09/10 14:28:28 $ 00007 Version: $Revision: 1.2 $ 00008 00009 Copyright (c) Insight Software Consortium. All rights reserved. 00010 See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details. 00011 00012 This software is distributed WITHOUT ANY WARRANTY; without even 00013 the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR 00014 PURPOSE. See the above copyright notices for more information. 00015 00016 =========================================================================*/ 00017 #ifndef __itkBioGeneNetwork_h_ 00018 #define __itkBioGeneNetwork_h_ 00019 00020 #ifdef _MSC_VER 00021 #pragma warning ( disable : 4786 ) 00022 #endif 00023 00024 #include <vector> 00025 00026 namespace itk { 00027 00028 namespace bio { 00029 00037 class GeneNetwork 00038 { 00039 public: 00040 typedef std::vector< float > ProteomeType; 00041 typedef std::vector< float > DomainsType; 00042 00043 public: 00044 GeneNetwork(); 00045 virtual ~GeneNetwork(); 00046 00047 void Copy( const GeneNetwork & genome ); 00048 00049 00050 private: 00051 00052 // This array contains the concentrations each protein 00053 // in the cell at a certain time. 00054 ProteomeType m_ProteinConcentration; 00055 00056 // This array contains the concentrations domain affinities 00057 // in the cell at a certain time. Since each protein may 00058 // have multiple domains and each domain have affinities 00059 // for standard domains in the regulatory section of genes, 00060 // this array is indexed by the domains in the regulatory 00061 // section. The final value on each entry indicates the 00062 // probability of a domain to be bound during a certain time 00063 // interval. 00064 DomainsType m_DomainConcentration; 00065 00066 }; 00067 00068 00069 } // end namespace bio 00070 00071 } // end namespace itk 00072 00073 #endif 00074 00075

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