itkBioGene.h

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/*=========================================================================

  Program:   Insight Segmentation & Registration Toolkit
  Module:    $RCSfile: itkBioGene.h,v $
  Language:  C++
  Date:      $Date: 2008-10-20 21:28:21 $
  Version:   $Revision: 1.5 $

  Copyright (c) Insight Software Consortium. All rights reserved.
  See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.

     This software is distributed WITHOUT ANY WARRANTY; without even 
     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
     PURPOSE.  See the above copyright notices for more information.

=========================================================================*/
#ifndef __itkBioGene_h
#define __itkBioGene_h

#ifdef _MSC_VER
#pragma warning ( disable : 4786 )
#endif

#include <string>
#include <vector>
#include <map>

namespace itk {

namespace bio {

class Gene  
{
public:
  typedef   std::string                           NameType;
  typedef   std::string                           DomainType;
  typedef   double                                AffinityType;
  typedef   std::map< DomainType, AffinityType >  ProteinDomainsType;

  typedef   struct { DomainType domain; bool type; } ControlDomainType;
  typedef   std::vector< ControlDomainType >         GeneControlDomainsType;

public:
  Gene();
  virtual ~Gene();

  void Copy( const Gene & genome );

  void SetName( const NameType & name );
  void SetName( const char * name );
  const char * GetName() const;

  void AddProteinDomain( const DomainType & domain, AffinityType affinity );


  void AddGeneControlDomain( const DomainType & domain, bool type );

private:
  NameType                  m_Name;
  GeneControlDomainsType    m_ControlDomains;
  ProteinDomainsType        m_ProteinDomains; 
};


} // end namespace bio

} // end namespace itk

#endif

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