itkBinaryContourImageFilter.h
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00018 #ifndef __itkBinaryContourImageFilter_h
00019 #define __itkBinaryContourImageFilter_h
00020
00021 #include "itkInPlaceImageFilter.h"
00022 #include "itkImage.h"
00023 #include "itkConceptChecking.h"
00024 #include <vector>
00025 #include <map>
00026 #include "itkProgressReporter.h"
00027 #include "itkBarrier.h"
00028
00029 namespace itk
00030 {
00031
00051 template <class TInputImage, class TOutputImage>
00052 class ITK_EXPORT BinaryContourImageFilter :
00053 public InPlaceImageFilter< TInputImage, TOutputImage >
00054 {
00055 public:
00059 typedef BinaryContourImageFilter Self;
00060 typedef InPlaceImageFilter< TInputImage, TOutputImage > Superclass;
00061
00065 typedef typename Superclass::InputImagePointer InputImagePointer;
00066
00071 typedef typename TOutputImage::PixelType OutputPixelType;
00072 typedef typename TOutputImage::InternalPixelType OutputInternalPixelType;
00073 typedef typename TInputImage::PixelType InputPixelType;
00074 typedef typename TInputImage::InternalPixelType InputInternalPixelType;
00075
00076 itkStaticConstMacro(ImageDimension, unsigned int,
00077 TOutputImage::ImageDimension);
00078 itkStaticConstMacro(OutputImageDimension, unsigned int,
00079 TOutputImage::ImageDimension);
00080 itkStaticConstMacro(InputImageDimension, unsigned int,
00081 TInputImage::ImageDimension);
00082
00086 typedef TInputImage InputImageType;
00087 typedef typename TInputImage::IndexType IndexType;
00088 typedef typename TInputImage::SizeType SizeType;
00089 typedef typename TInputImage::OffsetType OffsetType;
00090 typedef typename TInputImage::PixelType InputImagePixelType;
00091
00092 typedef TOutputImage OutputImageType;
00093 typedef typename TOutputImage::RegionType RegionType;
00094 typedef typename TOutputImage::IndexType OutputIndexType;
00095 typedef typename TOutputImage::SizeType OutputSizeType;
00096 typedef typename TOutputImage::OffsetType OutputOffsetType;
00097 typedef typename TOutputImage::PixelType OutputImagePixelType;
00098
00099 typedef std::list<IndexType> ListType;
00100
00104 typedef SmartPointer<Self> Pointer;
00105 typedef SmartPointer<const Self> ConstPointer;
00106
00110 itkTypeMacro(BinaryContourImageFilter, ImageToImageFilter);
00111
00115 itkNewMacro(Self);
00116
00123 itkSetMacro(FullyConnected, bool);
00124 itkGetConstReferenceMacro(FullyConnected, bool);
00125 itkBooleanMacro(FullyConnected);
00127
00128
00129 itkConceptMacro(SameDimension,
00130 (Concept::SameDimension<itkGetStaticConstMacro(InputImageDimension),
00131 itkGetStaticConstMacro(OutputImageDimension)>));
00132
00137 itkSetMacro(BackgroundValue, OutputImagePixelType);
00138 itkGetMacro(BackgroundValue, OutputImagePixelType);
00140
00145 itkSetMacro(ForegroundValue, InputImagePixelType);
00146 itkGetMacro(ForegroundValue, InputImagePixelType);
00148
00149 protected:
00150 BinaryContourImageFilter()
00151 {
00152 m_FullyConnected = false;
00153 m_ForegroundValue = NumericTraits< InputImagePixelType >::max();
00154 m_BackgroundValue = NumericTraits< OutputImagePixelType >::Zero;
00155 m_NumberOfThreads = 0;
00156 this->SetInPlace( false );
00157 }
00158 virtual ~BinaryContourImageFilter() {}
00159 BinaryContourImageFilter(const Self&) {}
00160 void PrintSelf(std::ostream& os, Indent indent) const;
00161
00165 void BeforeThreadedGenerateData ();
00166 void AfterThreadedGenerateData ();
00167 void ThreadedGenerateData (const RegionType& outputRegionForThread, int threadId);
00169
00173 void GenerateInputRequestedRegion();
00174
00179 void EnlargeOutputRequestedRegion(DataObject *itkNotUsed(output));
00180
00181 private:
00182 InputImagePixelType m_ForegroundValue;
00183 OutputImagePixelType m_BackgroundValue;
00184 bool m_FullyConnected;
00185
00186
00187 typedef typename TOutputImage::RegionType::SizeType OutSizeType;
00188
00189
00190 class runLength
00191 {
00192 public:
00193
00194 long int length;
00195 typename InputImageType::IndexType where;
00196 };
00197
00198 typedef std::vector<runLength> lineEncoding;
00199
00200
00201 typedef std::vector<lineEncoding> LineMapType;
00202
00203 typedef std::vector<long> OffsetVec;
00204
00205
00206 typedef std::vector<unsigned long int> UnionFindType;
00207
00208 bool CheckNeighbors(const OutputIndexType &A,
00209 const OutputIndexType &B);
00210
00211 void CompareLines(lineEncoding ¤t, const lineEncoding &Neighbour);
00212
00213
00214 void SetupLineOffsets(OffsetVec &LineOffsets);
00215
00216 void Wait()
00217 {
00218 if( m_NumberOfThreads > 1 )
00219 {
00220 m_Barrier->Wait();
00221 }
00222 }
00223
00224 typename Barrier::Pointer m_Barrier;
00225 LineMapType m_ForegroundLineMap;
00226 LineMapType m_BackgroundLineMap;
00227 long m_NumberOfThreads;
00228 };
00229
00230 }
00231
00232 #ifndef ITK_MANUAL_INSTANTIATION
00233 #include "itkBinaryContourImageFilter.txx"
00234 #endif
00235
00236 #endif
00237