itkDiffeomorphicDemonsRegistrationFilter.h

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/*=========================================================================

  Program:   Insight Segmentation & Registration Toolkit
  Module:    $RCSfile: itkDiffeomorphicDemonsRegistrationFilter.h,v $
  Language:  C++
  Date:      $Date: 2008-07-05 00:07:02 $
  Version:   $Revision: 1.1 $

  Copyright (c) Insight Software Consortium. All rights reserved.
  See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.

     This software is distributed WITHOUT ANY WARRANTY; without even
     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
     PURPOSE.  See the above copyright notices for more information.

=========================================================================*/

#ifndef __itkDiffeomorphicDemonsRegistrationFilter_h
#define __itkDiffeomorphicDemonsRegistrationFilter_h

#include "itkPDEDeformableRegistrationFilter.h"
#include "itkESMDemonsRegistrationFunction.h"

#include "itkMultiplyByConstantImageFilter.h"
#include "itkExponentialDeformationFieldImageFilter.h"
#include "itkWarpVectorImageFilter.h"
#include "itkVectorLinearInterpolateNearestNeighborExtrapolateImageFunction.h"
#include "itkAddImageFilter.h"

namespace itk {

template<class TFixedImage, class TMovingImage, class TDeformationField>
class ITK_EXPORT DiffeomorphicDemonsRegistrationFilter : 
    public PDEDeformableRegistrationFilter< TFixedImage, TMovingImage,
                                            TDeformationField>
{
public:
  typedef DiffeomorphicDemonsRegistrationFilter       Self;
  typedef PDEDeformableRegistrationFilter<
    TFixedImage, TMovingImage,TDeformationField>      Superclass;
  typedef SmartPointer<Self>                          Pointer;
  typedef SmartPointer<const Self>                    ConstPointer;

  itkNewMacro(Self);

  itkTypeMacro( DiffeomorphicDemonsRegistrationFilter, 
                PDEDeformableRegistrationFilter );

  typedef typename Superclass::FixedImageType           FixedImageType;
  typedef typename Superclass::FixedImagePointer        FixedImagePointer;

  typedef typename Superclass::MovingImageType          MovingImageType;
  typedef typename Superclass::MovingImagePointer       MovingImagePointer;

  typedef typename Superclass::DeformationFieldType     DeformationFieldType;
  typedef typename Superclass::DeformationFieldPointer  DeformationFieldPointer;

  typedef typename 
    Superclass::FiniteDifferenceFunctionType            FiniteDifferenceFunctionType;

  typedef typename 
    FiniteDifferenceFunctionType::TimeStepType          TimeStepType;

  typedef ESMDemonsRegistrationFunction<
    FixedImageType,
    MovingImageType, DeformationFieldType>              DemonsRegistrationFunctionType;
  typedef typename 
    DemonsRegistrationFunctionType::GradientType        GradientType;

  virtual double GetMetric() const;
  virtual const double &GetRMSChange() const;

  virtual void SetUseGradientType( GradientType gtype );
  virtual GradientType GetUseGradientType() const;

  itkSetMacro( UseFirstOrderExp, bool );
  itkGetMacro( UseFirstOrderExp, bool );
  itkBooleanMacro( UseFirstOrderExp );

  virtual void SetIntensityDifferenceThreshold(double);
  virtual double GetIntensityDifferenceThreshold() const;

  virtual void SetMaximumUpdateStepLength(double);
  virtual double GetMaximumUpdateStepLength() const;

protected:
  DiffeomorphicDemonsRegistrationFilter();
  ~DiffeomorphicDemonsRegistrationFilter() {}
  void PrintSelf(std::ostream& os, Indent indent) const;

  virtual void InitializeIteration();

  virtual void AllocateUpdateBuffer();

  virtual void ApplyUpdate(TimeStepType dt);

private:
  DiffeomorphicDemonsRegistrationFilter(const Self&); //purposely not implemented
  void operator=(const Self&); //purposely not implemented

  DemonsRegistrationFunctionType *  DownCastDifferenceFunctionType();
  const DemonsRegistrationFunctionType *  DownCastDifferenceFunctionType() const;


  typedef MultiplyByConstantImageFilter<
    DeformationFieldType, 
    TimeStepType, DeformationFieldType >                MultiplyByConstantType;

  typedef ExponentialDeformationFieldImageFilter< 
    DeformationFieldType, DeformationFieldType >        FieldExponentiatorType;

  
  typedef WarpVectorImageFilter<
     DeformationFieldType, 
     DeformationFieldType, DeformationFieldType>        VectorWarperType;

  typedef VectorLinearInterpolateNearestNeighborExtrapolateImageFunction<
     DeformationFieldType, double>                      FieldInterpolatorType;

  typedef AddImageFilter<
     DeformationFieldType, 
     DeformationFieldType, DeformationFieldType>        AdderType;


  typedef typename MultiplyByConstantType::Pointer      MultiplyByConstantPointer;
  typedef typename FieldExponentiatorType::Pointer      FieldExponentiatorPointer;
  typedef typename VectorWarperType::Pointer            VectorWarperPointer; 
  typedef typename FieldInterpolatorType::Pointer       FieldInterpolatorPointer;
  typedef typename FieldInterpolatorType::OutputType    FieldInterpolatorOutputType;
  typedef typename AdderType::Pointer                   AdderPointer;


  MultiplyByConstantPointer m_Multiplier;
  FieldExponentiatorPointer m_Exponentiator;
  VectorWarperPointer       m_Warper;
  AdderPointer              m_Adder;
  bool                      m_UseFirstOrderExp;
};


} // end namespace itk

#ifndef ITK_MANUAL_INSTANTIATION
#include "itkDiffeomorphicDemonsRegistrationFilter.txx"
#endif

#endif