itkLabelContourImageFilter.h
Go to the documentation of this file.00001
00002
00003
00004
00005
00006
00007
00008
00009
00010
00011
00012
00013
00014
00015
00016
00017
00018 #ifndef __itkLabelContourImageFilter_h
00019 #define __itkLabelContourImageFilter_h
00020
00021 #include "itkInPlaceImageFilter.h"
00022 #include "itkImage.h"
00023 #include "itkConceptChecking.h"
00024 #include <vector>
00025 #include <map>
00026 #include "itkProgressReporter.h"
00027 #include "itkBarrier.h"
00028
00029 namespace itk
00030 {
00031
00052 template <class TInputImage, class TOutputImage>
00053 class ITK_EXPORT LabelContourImageFilter :
00054 public InPlaceImageFilter< TInputImage, TOutputImage >
00055 {
00056 public:
00060 typedef LabelContourImageFilter Self;
00061 typedef InPlaceImageFilter< TInputImage, TOutputImage > Superclass;
00062
00066 typedef typename Superclass::InputImagePointer InputImagePointer;
00067
00072 typedef typename TOutputImage::PixelType OutputPixelType;
00073 typedef typename TOutputImage::InternalPixelType OutputInternalPixelType;
00074 typedef typename TInputImage::PixelType InputPixelType;
00075 typedef typename TInputImage::InternalPixelType InputInternalPixelType;
00076
00077 itkStaticConstMacro(ImageDimension, unsigned int,
00078 TOutputImage::ImageDimension);
00079 itkStaticConstMacro(OutputImageDimension, unsigned int,
00080 TOutputImage::ImageDimension);
00081 itkStaticConstMacro(InputImageDimension, unsigned int,
00082 TInputImage::ImageDimension);
00083
00087 typedef TInputImage InputImageType;
00088 typedef typename TInputImage::IndexType IndexType;
00089 typedef typename TInputImage::SizeType SizeType;
00090 typedef typename TInputImage::OffsetType OffsetType;
00091 typedef typename TInputImage::PixelType InputImagePixelType;
00092
00093 typedef TOutputImage OutputImageType;
00094 typedef typename TOutputImage::RegionType RegionType;
00095 typedef typename TOutputImage::IndexType OutputIndexType;
00096 typedef typename TOutputImage::SizeType OutputSizeType;
00097 typedef typename TOutputImage::OffsetType OutputOffsetType;
00098 typedef typename TOutputImage::PixelType OutputImagePixelType;
00099
00100 typedef std::list<IndexType> ListType;
00101
00105 typedef SmartPointer<Self> Pointer;
00106 typedef SmartPointer<const Self> ConstPointer;
00107
00111 itkTypeMacro(LabelContourImageFilter, ImageToImageFilter);
00112
00116 itkNewMacro(Self);
00117
00124 itkSetMacro(FullyConnected, bool);
00125 itkGetConstReferenceMacro(FullyConnected, bool);
00126 itkBooleanMacro(FullyConnected);
00128
00129
00130 itkConceptMacro(SameDimension,
00131 (Concept::SameDimension<itkGetStaticConstMacro(InputImageDimension),
00132 itkGetStaticConstMacro(OutputImageDimension)>));
00133
00138 itkSetMacro(BackgroundValue, OutputImagePixelType);
00139 itkGetMacro(BackgroundValue, OutputImagePixelType);
00141
00142 protected:
00143 LabelContourImageFilter()
00144 {
00145 m_FullyConnected = false;
00146 m_BackgroundValue = NumericTraits< OutputImagePixelType >::Zero;
00147 m_NumberOfThreads = 0;
00148 this->SetInPlace( false );
00149 }
00150 virtual ~LabelContourImageFilter() {}
00151 LabelContourImageFilter(const Self&) {}
00152 void PrintSelf(std::ostream& os, Indent indent) const;
00153
00157 void BeforeThreadedGenerateData ();
00158 void AfterThreadedGenerateData ();
00159 void ThreadedGenerateData (const RegionType& outputRegionForThread, int threadId);
00161
00165 void GenerateInputRequestedRegion();
00166
00171 void EnlargeOutputRequestedRegion(DataObject *itkNotUsed(output));
00172
00173 private:
00174 OutputImagePixelType m_BackgroundValue;
00175 bool m_FullyConnected;
00176
00177
00178 typedef typename TOutputImage::RegionType::SizeType OutSizeType;
00179
00180
00181 class runLength
00182 {
00183 public:
00184
00185 long int length;
00186 typename InputImageType::IndexType where;
00187 InputImagePixelType label;
00188 };
00189
00190 typedef std::vector<runLength> lineEncoding;
00191
00192
00193 typedef std::vector<lineEncoding> LineMapType;
00194
00195 typedef std::vector<long> OffsetVec;
00196
00197
00198 typedef std::vector<unsigned long int> UnionFindType;
00199
00200 bool CheckNeighbors(const OutputIndexType &A,
00201 const OutputIndexType &B);
00202
00203 void CompareLines(lineEncoding ¤t, const lineEncoding &Neighbour);
00204
00205
00206 void SetupLineOffsets(OffsetVec &LineOffsets);
00207
00208 void Wait()
00209 {
00210 if( m_NumberOfThreads > 1 )
00211 {
00212 m_Barrier->Wait();
00213 }
00214 }
00215
00216 typename Barrier::Pointer m_Barrier;
00217 LineMapType m_LineMap;
00218 long m_NumberOfThreads;
00219 };
00220
00221 }
00222
00223 #ifndef ITK_MANUAL_INSTANTIATION
00224 #include "itkLabelContourImageFilter.txx"
00225 #endif
00226
00227 #endif
00228