itkMedialNodeTripletCorrespondenceProcess.h

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/*=========================================================================

  Program:   Insight Segmentation & Registration Toolkit
  Module:    $RCSfile: itkMedialNodeTripletCorrespondenceProcess.h,v $
  Language:  C++
  Date:      $Date: 2009-05-12 17:26:20 $
  Version:   $Revision: 1.4 $

  Copyright (c) Insight Software Consortium. All rights reserved.
  See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.

     This software is distributed WITHOUT ANY WARRANTY; without even 
     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
     PURPOSE.  See the above copyright notices for more information.

=========================================================================*/
#ifndef __itkMedialNodeTripletCorrespondenceProcess_h
#define __itkMedialNodeTripletCorrespondenceProcess_h

#include "itkImage.h"
#include "itkProcessObject.h"
#include "itkBloxCoreAtomImage.h"
#include "itkBloxCoreAtomPixel.h"
#include "itkMatrixResizeableDataObject.h"

#include "itkPNGImageIO.h"
#include "itkImageFileWriter.h"
#include "itkRawImageIO.h"

#include "itkCorrespondenceDataStructure.h"
#include "itkCorrespondenceDataStructureIterator.h"

namespace itk
{
  
template< typename TSourceImage >
class ITK_EXPORT MedialNodeTripletCorrespondenceProcess : public ProcessObject
{
public:
 
  itkStaticConstMacro(NDimensions, unsigned int, TSourceImage::ImageDimension);

  typedef MedialNodeTripletCorrespondenceProcess Self;
  typedef ProcessObject                          Superclass;
  typedef SmartPointer<Self>                     Pointer;
  typedef SmartPointer<const Self>               ConstPointer;

  typedef DataObject::Pointer DataObjectPointer;

  itkNewMacro(Self);

  itkTypeMacro(MedialNodeTripletCorrespondenceProcess, ProcessObject);

  typedef TSourceImage                             CoreAtomImageType;
  typedef typename CoreAtomImageType::Pointer      CoreAtomImagePointer;
  typedef typename CoreAtomImageType::RegionType   CoreAtomImageRegionType; 
  typedef typename CoreAtomImageType::PixelType    CoreAtomImagePixelType; 
  typedef typename CoreAtomImageType::ConstPointer CoreAtomImageConstPointer;

  typedef CorrespondingMedialNodeClique<itkGetStaticConstMacro(NDimensions),2> InputNodeType;
  typedef CorrespondenceDataStructure<InputNodeType,2> InputDataStructureType;
  typedef typename CorrespondenceDataStructure<InputNodeType,2>::Pointer InputDataStructurePointerType;
  typedef CorrespondenceDataStructureIterator<InputDataStructureType> InputIteratorType;

  typedef CorrespondingMedialNodeClique<itkGetStaticConstMacro(NDimensions),3> OutputNodeType;
  typedef CorrespondenceDataStructure<OutputNodeType,3> OutputDataStructureType;
  typedef typename CorrespondenceDataStructure<OutputNodeType,3>::Pointer OutputDataStructurePointerType;
  typedef CorrespondenceDataStructureIterator<OutputDataStructureType> OutputIteratorType;

  typedef MatrixResizeableDataObject<double>   DistanceMatrixType;
  typedef typename DistanceMatrixType::Pointer DistanceMatrixPointer;

  OutputDataStructureType * GetOutput(void);
  OutputDataStructureType * GetOutput(unsigned int idx);

  void SetPairDataStructure(const InputDataStructureType * InputDataStructure );

  void SetCoreAtomImageA( const CoreAtomImageType * CoreAtomImageA );

  void SetCoreAtomImageB( const CoreAtomImageType * CoreAtomImageB );

  void SetDistanceMatrixA( const DistanceMatrixType * DistanceMatrixA );

  void SetDistanceMatrixB( const DistanceMatrixType * DistanceMatrixB );

  virtual void Update() {this->GenerateData();}

  virtual DataObjectPointer MakeOutput(unsigned int idx);

  int GetNumberOfNodeTriplets() {return m_NumberOfTriplets;}
  int GetNumberOfNodeTripletBases() {return m_NumberOfNodeBaseTriplets;}

protected:

  MedialNodeTripletCorrespondenceProcess();
  virtual ~MedialNodeTripletCorrespondenceProcess(){} 

  void PrintSelf(std::ostream& os, Indent indent) const;

  void GenerateData();

  TSourceImage * GetCoreAtomImageA();
  TSourceImage * GetCoreAtomImageB();

  DistanceMatrixType * GetDistanceMatrixA();
  DistanceMatrixType * GetDistanceMatrixB();

private:
  MedialNodeTripletCorrespondenceProcess(const Self&); //purposely not implemented
  void operator=(const Self&); //purposely not implemented

  CoreAtomImagePointer m_CoreAtomImageA;
  CoreAtomImagePointer m_CoreAtomImageB;

  DistanceMatrixPointer m_DistanceMatrixA;
  DistanceMatrixPointer m_DistanceMatrixB;

  InputDataStructurePointerType  m_InputDataStructure;
  OutputDataStructurePointerType m_OutputDataStructure;

  int m_NumberOfTriplets;
  int m_NumberOfNodeBaseTriplets;

  bool m_CreateOutputFile;
};

} // end namespace itk

#ifndef ITK_MANUAL_INSTANTIATION
#include "itkMedialNodeTripletCorrespondenceProcess.txx"
#endif

#endif

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