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itkMesh.h

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00001 /*=========================================================================
00002 
00003   Program:   Insight Segmentation & Registration Toolkit
00004   Module:    $RCSfile: itkMesh.h,v $
00005   Language:  C++
00006   Date:      $Date: 2008-06-16 02:07:16 $
00007   Version:   $Revision: 1.97 $
00008 
00009   Copyright (c) Insight Software Consortium. All rights reserved.
00010   See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.
00011 
00012   Portions of this code are covered under the VTK copyright.
00013   See VTKCopyright.txt or http://www.kitware.com/VTKCopyright.htm for details.
00014 
00015      This software is distributed WITHOUT ANY WARRANTY; without even
00016      the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
00017      PURPOSE.  See the above copyright notices for more information.
00018 
00019 =========================================================================*/
00020 #ifndef __itkMesh_h
00021 #define __itkMesh_h
00022 
00023 #if defined(_MSC_VER)
00024 #pragma warning ( disable : 4786 )
00025 #endif
00026 
00027 #include "itkPointSet.h"
00028 #include "itkCellInterface.h"
00029 #include "itkMapContainer.h"
00030 #include <vector>
00031 #include <set>
00032 
00033 
00034 namespace itk
00035 {
00036 
00043 template <typename TMesh>
00044 struct GetMeshDimension
00045 {
00046 itkStaticConstMacro(MaxTopologicalDimension, unsigned int, TMesh::MaxTopologicalDimension);
00047 itkStaticConstMacro(PointDimension, unsigned int,  TMesh::PointDimension);
00048 };
00050 
00051 
00111 template <
00112   typename TPixelType,
00113   unsigned int VDimension = 3,
00114   typename TMeshTraits = DefaultStaticMeshTraits< TPixelType , VDimension, VDimension >
00115   >
00116 class ITK_EXPORT Mesh : public PointSet<TPixelType, VDimension, TMeshTraits>
00117 {
00118 public:
00120   typedef Mesh                                          Self;
00121   typedef PointSet<TPixelType, VDimension, TMeshTraits> Superclass;
00122   typedef SmartPointer<Self>                            Pointer;
00123   typedef SmartPointer<const Self>                      ConstPointer;
00124 
00125   typedef typename Superclass::RegionType RegionType;
00126 
00128   itkNewMacro(Self);
00129 
00131   itkTypeMacro(Mesh, PointSet);
00132 
00134   typedef TMeshTraits                        MeshTraits;
00135   typedef typename MeshTraits::PixelType     PixelType;
00136   typedef typename MeshTraits::CellPixelType CellPixelType;
00137 
00139   itkStaticConstMacro(PointDimension, unsigned int,
00140                       TMeshTraits::PointDimension);
00141   itkStaticConstMacro(MaxTopologicalDimension, unsigned int,
00142                       TMeshTraits::MaxTopologicalDimension);
00144 
00147   typedef  enum {     CellsAllocationMethodUndefined,
00148                       CellsAllocatedAsStaticArray,
00149                       CellsAllocatedAsADynamicArray,
00150                       CellsAllocatedDynamicallyCellByCell
00151                                                 } CellsAllocationMethodType;
00152 
00154   typedef typename MeshTraits::CoordRepType            CoordRepType;
00155   typedef typename MeshTraits::InterpolationWeightType InterpolationWeightType;
00156   typedef typename MeshTraits::PointIdentifier         PointIdentifier;
00157   typedef typename MeshTraits::CellIdentifier          CellIdentifier;
00158   typedef typename MeshTraits::CellFeatureIdentifier   CellFeatureIdentifier;
00159   typedef typename MeshTraits::PointHashType           PointHashType;
00160   typedef typename MeshTraits::PointType               PointType;
00161   typedef typename MeshTraits::PointsContainer         PointsContainer;
00162   typedef typename MeshTraits::CellTraits              CellTraits;
00163   typedef typename MeshTraits::CellsContainer          CellsContainer;
00164   typedef typename MeshTraits::PointCellLinksContainer PointCellLinksContainer;
00165   typedef typename MeshTraits::CellLinksContainer      CellLinksContainer;
00166   typedef typename MeshTraits::PointDataContainer      PointDataContainer;
00167   typedef typename MeshTraits::CellDataContainer       CellDataContainer;
00168 
00170   typedef PointLocator<PointIdentifier,itkGetStaticConstMacro(PointDimension),
00171                        CoordRepType,PointsContainer>  PointLocatorType;
00172   typedef BoundingBox<PointIdentifier,itkGetStaticConstMacro(PointDimension),
00173                       CoordRepType,PointsContainer>   BoundingBoxType;
00175 
00177   typedef typename PointsContainer::Pointer       PointsContainerPointer;
00178   typedef typename CellsContainer::Pointer        CellsContainerPointer;
00179   typedef typename CellLinksContainer::Pointer    CellLinksContainerPointer;
00180   typedef typename PointDataContainer::Pointer    PointDataContainerPointer;
00181   typedef typename CellDataContainer::Pointer     CellDataContainerPointer;
00182   typedef typename PointLocatorType::Pointer      PointLocatorPointer;
00183   typedef typename BoundingBoxType::Pointer       BoundingBoxPointer;
00184 
00186   typedef typename
00187           PointsContainer::ConstIterator        PointsContainerConstIterator;
00188   typedef typename
00189           PointsContainer::Iterator             PointsContainerIterator;
00190   typedef typename
00191           CellsContainer::ConstIterator         CellsContainerConstIterator;
00192   typedef typename
00193           CellsContainer::Iterator              CellsContainerIterator;
00194   typedef typename
00195           CellLinksContainer::ConstIterator     CellLinksContainerIterator;
00196   typedef typename
00197           PointDataContainer::ConstIterator     PointDataContainerIterator;
00198   typedef typename
00199           CellDataContainer::ConstIterator      CellDataContainerIterator;
00200   typedef typename
00201      PointCellLinksContainer::const_iterator  PointCellLinksContainerIterator;
00202 
00204   typedef CellFeatureIdentifier  CellFeatureCount;
00205 
00207   typedef CellInterface<CellPixelType,CellTraits>  CellType;
00208   typedef typename CellType::CellAutoPointer       CellAutoPointer;
00209 
00211   typedef typename CellType::MultiVisitor CellMultiVisitorType;
00212 
00221   class BoundaryAssignmentIdentifier
00222     {
00223   public:
00225     typedef BoundaryAssignmentIdentifier Self;
00226 
00229     BoundaryAssignmentIdentifier() {}
00230     BoundaryAssignmentIdentifier(CellIdentifier cellId,
00231                                  CellFeatureIdentifier featureId):
00232       m_CellId(cellId), m_FeatureId(featureId) {}
00234 
00236     CellIdentifier m_CellId;
00237 
00239     CellFeatureIdentifier  m_FeatureId;
00240 
00243     bool operator < (const Self& r) const
00244       {
00245       return ((m_CellId < r.m_CellId) ||
00246               ((m_CellId == r.m_CellId) && (m_FeatureId < r.m_FeatureId)));
00247       }
00248 
00251     bool operator == (const Self& r) const
00252       {
00253       return ((m_CellId == r.m_CellId) && (m_FeatureId == r.m_FeatureId));
00254       }
00255   }; // End Class: Mesh::BoundaryAssignmentIdentifier
00257 
00258 
00266   typedef MapContainer< BoundaryAssignmentIdentifier , CellIdentifier >
00267         BoundaryAssignmentsContainer;
00268   typedef typename BoundaryAssignmentsContainer::Pointer
00269         BoundaryAssignmentsContainerPointer;
00270   typedef std::vector< BoundaryAssignmentsContainerPointer >
00271         BoundaryAssignmentsContainerVector;
00272 
00273 
00274 protected:
00275 
00278   CellsContainerPointer  m_CellsContainer;
00279 
00284   CellDataContainerPointer  m_CellDataContainer;
00285 
00289   CellLinksContainerPointer  m_CellLinksContainer;
00290 
00300   BoundaryAssignmentsContainerVector  m_BoundaryAssignmentsContainers;
00301 
00302 public:
00304   unsigned long GetNumberOfCells() const;
00305   void PassStructure(Self* inputMesh);
00306   virtual void Initialize();
00308 
00310   virtual void CopyInformation(const DataObject *data);
00311   virtual void Graft(const DataObject *data);
00313 
00318   void SetCellLinks(CellLinksContainer*);
00319 #ifndef CABLE_CONFIGURATION
00320   CellLinksContainerPointer GetCellLinks();
00321   const CellLinksContainerPointer GetCellLinks() const;
00323 
00326   void SetCells(CellsContainer*);
00327 
00328   CellsContainerPointer GetCells();
00329   const CellsContainerPointer GetCells() const;
00330 #endif
00331 
00335   void SetCellData(CellDataContainer*);
00336   CellDataContainerPointer GetCellData();
00337   const CellDataContainerPointer GetCellData() const;
00339 
00348 #if !defined(CABLE_CONFIGURATION)
00349   void SetBoundaryAssignments(int dimension,
00350                               BoundaryAssignmentsContainer*);
00351 #endif
00352 
00353 #ifndef CABLE_CONFIGURATION
00354   BoundaryAssignmentsContainerPointer GetBoundaryAssignments(int dimension);
00355   const BoundaryAssignmentsContainerPointer GetBoundaryAssignments(
00356     int dimension) const;
00357 
00363   void SetCell(CellIdentifier, CellAutoPointer & );
00364   bool GetCell(CellIdentifier, CellAutoPointer & ) const;
00365 #endif
00366 
00369   void SetCellData(CellIdentifier, CellPixelType);
00370   bool GetCellData(CellIdentifier, CellPixelType*) const;
00372 
00385   void SetBoundaryAssignment(int dimension, CellIdentifier cellId,
00386                              CellFeatureIdentifier featureId,
00387                              CellIdentifier boundaryId);
00388 
00397   bool GetBoundaryAssignment(int dimension, CellIdentifier cellId,
00398                              CellFeatureIdentifier featureId,
00399                              CellIdentifier* boundaryId) const;
00400   bool RemoveBoundaryAssignment(int dimension, CellIdentifier cellId,
00401                                 CellFeatureIdentifier featureId);
00403 
00405   CellFeatureCount GetNumberOfCellBoundaryFeatures(int dimension,
00406                                                    CellIdentifier) const;
00407 
00408 #ifndef CABLE_CONFIGURATION
00409 
00411   bool GetCellBoundaryFeature(int dimension, CellIdentifier,
00412                               CellFeatureIdentifier, CellAutoPointer& ) const;
00413 #endif
00414 
00419   unsigned long GetCellBoundaryFeatureNeighbors(
00420     int dimension, CellIdentifier, CellFeatureIdentifier,
00421     std::set<CellIdentifier>* cellSet);
00422 
00427   unsigned long GetCellNeighbors( CellIdentifier cellId,
00428                                   std::set<CellIdentifier>* cellSet );
00429 #ifndef CABLE_CONFIGURATION
00430 
00438   bool GetAssignedCellBoundaryIfOneExists(int dimension, CellIdentifier,
00439                                           CellFeatureIdentifier,
00440                                           CellAutoPointer& ) const;
00441 #endif
00442 
00445   void BuildCellLinks();
00446 
00447 #ifndef CABLE_CONFIGURATION
00448 
00451   BoundingBoxPointer GetCellBoundingBox(CellIdentifier cellId,
00452                                         BoundingBoxPointer bbox);
00453 
00457   virtual void Accept(CellMultiVisitorType* mv);
00458 #endif
00459 
00464   itkSetMacro( CellsAllocationMethod, CellsAllocationMethodType );
00465   itkGetConstReferenceMacro( CellsAllocationMethod, CellsAllocationMethodType );
00467 
00468 protected:
00470   Mesh();
00471   ~Mesh();
00472   void PrintSelf(std::ostream& os, Indent indent) const;
00474 
00478   void ReleaseCellsMemory();
00479 
00480 private:
00481   Mesh(const Self&); //purposely not implemented
00482   void operator=(const Self&); //purposely not implemented
00483 
00484   CellsAllocationMethodType             m_CellsAllocationMethod;
00485 
00486 }; // End Class: Mesh
00487 
00488 } // end namespace itk
00489 
00490 #ifndef ITK_MANUAL_INSTANTIATION
00491 #ifndef CABLE_CONFIGURATION
00492 #include "itkMesh.txx"
00493 #endif
00494 #endif
00495 
00496 #endif
00497 

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