itkBinaryContourImageFilter.h

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/*=========================================================================

  Program:   Insight Segmentation & Registration Toolkit
  Module:    $RCSfile: itkBinaryContourImageFilter.h,v $
  Language:  C++
  Date:      $Date: 2009-04-23 03:43:41 $
  Version:   $Revision: 1.2 $

  Copyright (c) Insight Software Consortium. All rights reserved.
  See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.

     This software is distributed WITHOUT ANY WARRANTY; without even 
     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
     PURPOSE.  See the above copyright notices for more information.

=========================================================================*/

#ifndef __itkBinaryContourImageFilter_h
#define __itkBinaryContourImageFilter_h

#include "itkInPlaceImageFilter.h"
#include "itkImage.h"
#include "itkConceptChecking.h"
#include <vector>
#include <map>
#include "itkProgressReporter.h"
#include "itkBarrier.h"

namespace itk
{

template <class TInputImage, class TOutputImage>
class ITK_EXPORT BinaryContourImageFilter : 
    public InPlaceImageFilter< TInputImage, TOutputImage > 
{
public:
  typedef BinaryContourImageFilter                        Self;
  typedef InPlaceImageFilter< TInputImage, TOutputImage > Superclass;

  typedef typename Superclass::InputImagePointer          InputImagePointer;

  typedef typename TOutputImage::PixelType                OutputPixelType;
  typedef typename TOutputImage::InternalPixelType        OutputInternalPixelType;
  typedef typename TInputImage::PixelType                 InputPixelType;
  typedef typename TInputImage::InternalPixelType         InputInternalPixelType;

  itkStaticConstMacro(ImageDimension, unsigned int,
                      TOutputImage::ImageDimension);
  itkStaticConstMacro(OutputImageDimension, unsigned int,
                      TOutputImage::ImageDimension);
  itkStaticConstMacro(InputImageDimension, unsigned int,
                      TInputImage::ImageDimension);
  
  typedef TInputImage                       InputImageType;
  typedef typename TInputImage::IndexType   IndexType;
  typedef typename TInputImage::SizeType    SizeType;
  typedef typename TInputImage::OffsetType  OffsetType;
  typedef typename TInputImage::PixelType   InputImagePixelType;

  typedef TOutputImage                      OutputImageType;
  typedef typename TOutputImage::RegionType RegionType;
  typedef typename TOutputImage::IndexType  OutputIndexType;
  typedef typename TOutputImage::SizeType   OutputSizeType;
  typedef typename TOutputImage::OffsetType OutputOffsetType;
  typedef typename TOutputImage::PixelType  OutputImagePixelType;

  typedef std::list<IndexType>              ListType;

  typedef SmartPointer<Self>        Pointer;
  typedef SmartPointer<const Self>  ConstPointer;

  itkTypeMacro(BinaryContourImageFilter, ImageToImageFilter);

  itkNewMacro(Self);

  itkSetMacro(FullyConnected, bool);
  itkGetConstReferenceMacro(FullyConnected, bool);
  itkBooleanMacro(FullyConnected);

  // Concept checking -- input and output dimensions must be the same
  itkConceptMacro(SameDimension,
    (Concept::SameDimension<itkGetStaticConstMacro(InputImageDimension),
       itkGetStaticConstMacro(OutputImageDimension)>));

  itkSetMacro(BackgroundValue, OutputImagePixelType);
  itkGetConstMacro(BackgroundValue, OutputImagePixelType);

  itkSetMacro(ForegroundValue, InputImagePixelType);
  itkGetConstMacro(ForegroundValue, InputImagePixelType);

protected:
  BinaryContourImageFilter() 
    {
    m_FullyConnected = false;
    m_ForegroundValue = NumericTraits< InputImagePixelType >::max();
    m_BackgroundValue = NumericTraits< OutputImagePixelType >::Zero;
    m_NumberOfThreads = 0;
    this->SetInPlace( false );
    }
  virtual ~BinaryContourImageFilter() {}
  BinaryContourImageFilter(const Self&) {}
  void PrintSelf(std::ostream& os, Indent indent) const;

  void BeforeThreadedGenerateData ();
  void AfterThreadedGenerateData ();
  void ThreadedGenerateData (const RegionType& outputRegionForThread, int threadId);

  void GenerateInputRequestedRegion();

  void EnlargeOutputRequestedRegion(DataObject *itkNotUsed(output));

private:
  InputImagePixelType  m_ForegroundValue;
  OutputImagePixelType m_BackgroundValue;
  bool                 m_FullyConnected;
  
  // some additional types
  typedef typename TOutputImage::RegionType::SizeType OutSizeType;

  // types to support the run length encoding of lines
  class runLength
    {
    public:
    // run length information - may be a more type safe way of doing this
    long int length;
    typename InputImageType::IndexType where; // Index of the start of the run
    };

  typedef std::vector<runLength> lineEncoding;

  // the map storing lines
  typedef std::vector<lineEncoding> LineMapType;
  
  typedef std::vector<long> OffsetVec;

  // the types to support union-find operations
  typedef std::vector<unsigned long int> UnionFindType;

  bool CheckNeighbors(const OutputIndexType &A, 
                      const OutputIndexType &B);

  void CompareLines(lineEncoding &current, const lineEncoding &Neighbour);


  void SetupLineOffsets(OffsetVec &LineOffsets);

  void Wait()
    {
    if( m_NumberOfThreads > 1 )
      {
      m_Barrier->Wait();
      }
    }

  typename Barrier::Pointer m_Barrier;
  LineMapType               m_ForegroundLineMap;
  LineMapType               m_BackgroundLineMap;
  long                      m_NumberOfThreads;
};
  
} // end namespace itk

#ifndef ITK_MANUAL_INSTANTIATION
#include "itkBinaryContourImageFilter.txx"
#endif

#endif