itkConnectedRegionsMeshFilter.h

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/*=========================================================================

  Program:   Insight Segmentation & Registration Toolkit
  Module:    $RCSfile: itkConnectedRegionsMeshFilter.h,v $
  Language:  C++
  Date:      $Date: 2009-09-17 11:04:00 $
  Version:   $Revision: 1.28 $

  Copyright (c) Insight Software Consortium. All rights reserved.
  See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.

  Portions of this code are covered under the VTK copyright.
  See VTKCopyright.txt or http://www.kitware.com/VTKCopyright.htm for details.

     This software is distributed WITHOUT ANY WARRANTY; without even 
     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
     PURPOSE.  See the above copyright notices for more information.

=========================================================================*/
#ifndef __itkConnectedRegionsMeshFilter_h
#define __itkConnectedRegionsMeshFilter_h

#include "itkMeshToMeshFilter.h"

namespace itk
{
  
template <class TInputMesh, class TOutputMesh>
class ITK_EXPORT ConnectedRegionsMeshFilter 
: public MeshToMeshFilter<TInputMesh, TOutputMesh> 
{
public:
  typedef ConnectedRegionsMeshFilter               Self;

  typedef MeshToMeshFilter<TInputMesh, TOutputMesh> Superclass;

  typedef SmartPointer<Self>                       Pointer;
  typedef SmartPointer<const Self>                 ConstPointer;

  itkNewMacro( Self );

  typedef TInputMesh                               InputMeshType;
  typedef TOutputMesh                              OutputMeshType;
  typedef typename TInputMesh::ConstPointer        InputMeshConstPointer;
  typedef typename TOutputMesh::Pointer            OutputMeshPointer;

  itkStaticConstMacro( PointDimension, unsigned int,
                       TInputMesh::PointDimension );

  typedef typename TInputMesh::PointType           InputMeshPointType;
  typedef typename TInputMesh::PointIdentifier     InputMeshPointIdentifier;
  typedef typename TInputMesh::PointsContainerConstPointer 
                                                   InputMeshPointsContainerConstPointer;
  typedef typename TInputMesh::CellsContainer      InputMeshCellsContainer;
  typedef typename TInputMesh::CellsContainerPointer 
                                                   InputMeshCellsContainerPointer;
  typedef typename TInputMesh::CellsContainerConstPointer 
                                                   InputMeshCellsContainerConstPointer;
  typedef typename TInputMesh::CellDataContainer   InputMeshCellDataContainer;
  typedef typename TInputMesh::CellDataContainerPointer 
                                                   InputMeshCellDataContainerPointer;
  typedef typename TInputMesh::CellDataContainerConstPointer 
                                                   InputMeshCellDataContainerConstPointer;
  typedef typename InputMeshType::PointsContainer::ConstIterator 
                                                   PointsContainerConstIterator;
  typedef typename InputMeshType::CellsContainer::ConstIterator
                                                   CellsContainerConstIterator;
  typedef typename InputMeshType::CellDataContainer::ConstIterator
                                                   CellDataContainerConstIterator;
  typedef typename TInputMesh::CellAutoPointer     InputMeshCellPointer;
  typedef typename TInputMesh::CellTraits::PointIdConstIterator 
                                                   InputMeshPointIdConstIterator;
  typedef typename TInputMesh::CellLinksContainerConstPointer
                                                   InputMeshCellLinksContainerConstPointer;
  typedef typename TInputMesh::PointCellLinksContainer
                                                   InputMeshCellLinksContainer;
  typedef typename TInputMesh::CellIdentifier      InputMeshCellIdentifier;

  enum { PointSeededRegions = 0,
         CellSeededRegions = 1,
         SpecifiedRegions = 2,
         LargestRegion = 3,
         AllRegions = 4,
         ClosestPointRegion = 5 };

  itkSetMacro( ExtractionMode, int );
  itkGetConstMacro( ExtractionMode, int );

  void SetExtractionModeToPointSeededRegions( void )
    {
    this->SetExtractionMode( Self::PointSeededRegions );
    }

  void SetExtractionModeToCellSeededRegions( void )
    {
    this->SetExtractionMode( Self::CellSeededRegions );
    }

  void SetExtractionModeToSpecifiedRegions( void )
    {
    this->SetExtractionMode( Self::SpecifiedRegions );
    }

  void SetExtractionModeToLargestRegion( void )
    {
    this->SetExtractionMode( Self::LargestRegion );
    }

  void SetExtractionModeToAllRegions( void )
    {
    this->SetExtractionMode( Self::AllRegions );
    }

  void SetExtractionModeToClosestPointRegion( void )
    {
    this->SetExtractionMode( Self::ClosestPointRegion );
    }

  void InitializeSeedList( void )
    {
    this->Modified();
    m_SeedList.clear();
    }

  void AddSeed( unsigned long id )
    {
    this->Modified();
    m_SeedList.push_back(id);
    }

  void DeleteSeed( unsigned long id );

  void InitializeSpecifiedRegionList( void )
    {
    this->Modified();
    m_RegionList.clear();
    }

  void AddSpecifiedRegion( unsigned long id )
    {
    this->Modified();
    m_RegionList.push_back(id);
    }

  void DeleteSpecifiedRegion( unsigned long id );

  void SetClosestPoint( InputMeshPointType& p )
    {
    if( m_ClosestPoint != p )
      {
      m_ClosestPoint = p;
      this->Modified();
      }
    }

  InputMeshPointType& GetClosestPoint( InputMeshPointType& p )
    {
    return m_ClosestPoint;
    }

  unsigned long GetNumberOfExtractedRegions()
    {
    return m_RegionList.size();
    }

protected:

  ConnectedRegionsMeshFilter( void );
  virtual ~ConnectedRegionsMeshFilter( void ) {}

  void PrintSelf( std::ostream& os, Indent indent ) const;

  virtual void GenerateData( void );

  void PropagateConnectedWave( void );

private:  

  ConnectedRegionsMeshFilter( const Self& ); //purposely not implemented
  void operator=( const Self& ); //purposely not implemented

  int                         m_ExtractionMode;
  InputMeshPointType          m_ClosestPoint;
  std::vector<unsigned long>  m_SeedList;
  std::vector<unsigned long>  m_RegionList;
  std::vector<unsigned long>  m_RegionSizes;
  
  std::vector<long>           m_Visited;
  unsigned long               m_NumberOfCellsInRegion;
  unsigned long               m_RegionNumber;
  std::vector<unsigned long> *m_Wave;
  std::vector<unsigned long> *m_Wave2;
  
}; // class declaration

} // end namespace itk

#ifndef ITK_MANUAL_INSTANTIATION
#include "itkConnectedRegionsMeshFilter.txx"
#endif

#endif