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itkBioGeneNetwork.h

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00001 /*=========================================================================
00002 
00003   Program:   Insight Segmentation & Registration Toolkit
00004   Module:    $RCSfile: itkBioGeneNetwork.h,v $
00005   Language:  C++
00006   Date:      $Date: 2008-10-20 21:28:21 $
00007   Version:   $Revision: 1.4 $
00008 
00009   Copyright (c) Insight Software Consortium. All rights reserved.
00010   See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.
00011 
00012      This software is distributed WITHOUT ANY WARRANTY; without even 
00013      the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
00014      PURPOSE.  See the above copyright notices for more information.
00015 
00016 =========================================================================*/
00017 #ifndef __itkBioGeneNetwork_h
00018 #define __itkBioGeneNetwork_h
00019 
00020 #ifdef _MSC_VER
00021 #pragma warning ( disable : 4786 )
00022 #endif
00023 
00024 #include <vector>
00025 
00026 namespace itk {
00027 
00028 namespace bio {
00029 
00037 class GeneNetwork  
00038 {
00039 public:
00040   typedef   std::vector< float >       ProteomeType;
00041   typedef   std::vector< float >       DomainsType;
00042 
00043 public:
00044   GeneNetwork();
00045   virtual ~GeneNetwork();
00046 
00047   void Copy( const GeneNetwork & genome );
00048 
00049 
00050 private:
00051 
00052   // This array contains the concentrations each protein
00053   // in the cell at a certain time.
00054   ProteomeType              m_ProteinConcentration;
00055 
00056   // This array contains the concentrations domain affinities 
00057   // in the cell at a certain time. Since each protein may 
00058   // have multiple domains and each domain have affinities
00059   // for standard domains in the regulatory section of genes,
00060   // this array is indexed by the domains in the regulatory
00061   // section. The final value on each entry indicates the 
00062   // probability of a domain to be bound during a certain time
00063   // interval.
00064   DomainsType               m_DomainConcentration;
00065 
00066 };
00067 
00068 
00069 } // end namespace bio
00070 
00071 } // end namespace itk
00072 
00073 #endif
00074 

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