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itkDeformableMesh3DFilter.h

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00001 /*=========================================================================
00002 
00003   Program:   Insight Segmentation & Registration Toolkit
00004   Module:    $RCSfile: itkDeformableMesh3DFilter.h,v $
00005   Language:  C++
00006   Date:      $Date: 2009-09-17 11:04:00 $
00007   Version:   $Revision: 1.30 $
00008 
00009   Copyright (c) Insight Software Consortium. All rights reserved.
00010   See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.
00011 
00012      This software is distributed WITHOUT ANY WARRANTY; without even 
00013      the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
00014      PURPOSE.  See the above copyright notices for more information.
00015 
00016 =========================================================================*/
00017 #ifndef __itkDeformableMesh3DFilter_h
00018 #define __itkDeformableMesh3DFilter_h
00019 
00020 #include "itkMeshToMeshFilter.h"
00021 #include "vnl/vnl_matrix_fixed.h"
00022 #include "vnl/vnl_math.h"
00023 #include "itkMesh.h"
00024 #include "itkVector.h"
00025 #include "itkTriangleCell.h"
00026 #include "itkImage.h"
00027 #include "itkImageRegionIterator.h"
00028 #include <itkCovariantVector.h>
00029 
00030 namespace itk
00031 {
00032 
00055 template <class TInputMesh, class TOutputMesh>
00056 class ITK_EXPORT DeformableMesh3DFilter : public MeshToMeshFilter<TInputMesh, TOutputMesh>
00057 {
00058 public:
00060   typedef DeformableMesh3DFilter  Self;
00061 
00063   typedef MeshToMeshFilter<TInputMesh, TOutputMesh> Superclass;
00064 
00066   typedef SmartPointer<Self>        Pointer;
00067   typedef SmartPointer<const Self>  ConstPointer;
00068 
00070   itkNewMacro(Self);
00071 
00073   itkTypeMacro(DeformableMesh3DFilter,MeshToMeshFilter);
00074 
00076   typedef TInputMesh                          InputMeshType;
00077   typedef typename InputMeshType::PointsContainerPointer
00078                                               InputPointsContainerPointer;
00079   typedef typename InputMeshType::PointsContainerConstPointer
00080                                               InputPointsContainerConstPointer;
00081   typedef typename InputMeshType::PointsContainer::Iterator
00082                                               InputPointsContainerIterator;
00083   typedef typename InputMeshType::PointsContainer::ConstIterator
00084                                               InputPointsContainerConstIterator;
00085   typedef typename InputMeshType::PointDataContainerPointer
00086                                               InputPointDataContainerPointer;
00087   typedef typename InputMeshType::PointDataContainer::Iterator
00088                                               InputPointDataContainerIterator;
00089   typedef typename InputMeshType::CellsContainerPointer
00090                                               InputCellsContainerPointer;
00091   typedef typename InputMeshType::CellsContainer::Iterator
00092                                               InputCellsContainerIterator;
00093   typedef typename InputMeshType::CellsContainerConstPointer
00094                                               InputCellsContainerConstPointer;
00095   typedef typename InputMeshType::CellsContainer::ConstIterator
00096                                               InputCellsContainerConstIterator;
00097   typedef typename InputMeshType::CellDataContainerPointer
00098                                               InputCellDataContainerPointer;
00099   typedef typename InputMeshType::CellDataContainer::Iterator
00100                                               InputCellDataContainerIterator;
00101   typedef typename InputMeshType::CellDataContainerConstPointer
00102                                               InputCellDataContainerConstPointer;
00103   typedef typename InputMeshType::CellDataContainer::ConstIterator
00104                                               InputCellDataContainerConstIterator;
00105 
00106   typedef TOutputMesh                         OutputMeshType;
00107   typedef typename OutputMeshType::PointsContainerPointer
00108                                               OutputPointsContainerPointer;
00109   typedef typename OutputMeshType::CellsContainer
00110                                               OutputCellsContainer;
00111   typedef typename OutputMeshType::CellsContainerPointer
00112                                               OutputCellsContainerPointer;
00113   typedef typename OutputMeshType::PointsContainer::Iterator
00114                                               OutputPointsContainerIterator;
00115 
00117   typedef typename InputMeshType::CellType          CellType;
00118   typedef typename InputMeshType::CellTraits        CellTraits;
00119   typedef typename InputMeshType::PointType         InputPointType;
00120   typedef typename InputMeshType::PixelType         PixelType;
00121 
00123   typedef Image<unsigned char, 3>                      PotentialImageType;
00124   typedef ImageRegionIterator<PotentialImageType>      PotentialIterator;
00125   typedef CovariantVector<PixelType, 3>                GradientType;
00126   typedef Image<GradientType, 3>                       GradientImageType;
00127   typedef ImageRegionIterator<GradientImageType>       GradientIterator;
00128   typedef typename GradientImageType::SizeType         ImageSizeType;
00129   typedef typename GradientImageType::IndexType        ImageIndexType;
00130 
00131   typedef itk::CellInterface<PixelType, CellTraits>    TCellInterface;
00132   typedef itk::TriangleCell<TCellInterface>            TriCell;
00133 
00134   typedef CovariantVector<int, 3>                      int3DVector;
00135   typedef CovariantVector<double, 2>                   double2DVector;
00136   typedef CovariantVector<double, 3>                   double3DVector;
00137 
00138   /* Mesh pointer definition. */
00139   typedef typename InputMeshType::Pointer           InputMeshPointer;
00140   typedef typename InputMeshType::ConstPointer      InputMeshConstPointer;
00141   typedef typename OutputMeshType::Pointer          OutputMeshPointer;
00142   typedef typename GradientImageType::Pointer       GradientImagePointer;
00143 
00144   /* Stiffness Matrix Type definition */
00145   typedef vnl_matrix_fixed<double, 4, 4>  StiffnessMatrixType;
00146   typedef StiffnessMatrixType *           StiffnessMatrixRawPointer; 
00147 
00149   void SetStiffnessMatrix( StiffnessMatrixType *stiff, int i );
00150 
00152   itkSetMacro(Gradient, GradientImagePointer);
00153   itkGetConstMacro(Gradient, GradientImagePointer);
00155 
00156   itkSetMacro(StepThreshold, int);
00157   itkGetConstMacro(StepThreshold, int);
00158 
00159   itkSetMacro(Stiffness, double2DVector);
00160   itkGetConstMacro(Stiffness, double2DVector);
00161 
00162   itkSetMacro(TimeStep, double);
00163   itkGetConstMacro(TimeStep, double);
00164 
00165   itkSetMacro(Scale, double3DVector);
00166 
00167   itkSetMacro(PotentialMagnitude, PixelType);
00168   itkSetMacro(GradientMagnitude, PixelType);
00169   itkSetMacro(PotentialOn, unsigned short);
00170   itkSetMacro(ObjectLabel, unsigned char);
00171 
00172   itkGetConstMacro(Normals, InputMeshPointer);
00173 
00174 protected:
00175   DeformableMesh3DFilter();
00176   ~DeformableMesh3DFilter();
00177   DeformableMesh3DFilter(const Self&) {}
00178   void operator=(const Self&) {}
00179   void PrintSelf(std::ostream& os, Indent indent) const;
00180 
00181   virtual void GenerateData();
00182 
00183 private:
00185   InputMeshPointer  m_Forces; 
00186   InputMeshPointer  m_Normals;
00187   InputMeshPointer  m_Displacements;
00188   InputMeshPointer  m_Derives;
00189   InputMeshPointer  m_Locations;
00190 
00191   void Initialize();
00192   void SetDefaultStiffnessMatrix();
00193   void SetMeshStiffness();
00194   void Advance();     // update data for next iteration
00195   void ComputeDt();   // compute point positions
00196   void ComputeOutput();
00197   void GradientFit(); // fit the model with gradient information
00198   void ComputeNormals();
00199   void PotentialFit();
00200 
00202   StiffnessMatrixType         m_StiffnessMatrix[10];
00203   StiffnessMatrixRawPointer  *m_K;
00204 
00206   double2DVector    m_Stiffness;
00207 
00209   double3DVector    m_Scale;
00210 
00212   int       m_NumberOfNodes;
00213   int       m_NumberOfCells;
00214 
00216   int       m_ImageHeight;
00217   int       m_ImageDepth;
00218 
00221   unsigned short m_ModelXUpLimit;
00222   unsigned short m_ModelXDownLimit;
00223   unsigned short m_ModelYUpLimit;
00224   unsigned short m_ModelYDownLimit;
00225   unsigned short m_ModelZUpLimit;
00226   unsigned short m_ModelZDownLimit;
00227   unsigned short m_PotentialOn;
00228   unsigned char  m_ObjectLabel;
00229   PixelType      m_GradientMagnitude;
00230   PixelType      m_PotentialMagnitude;
00231 
00233   GradientImagePointer        m_Gradient; 
00234   PotentialImageType::Pointer m_Potential;  
00235 };
00236 
00237 } // end namespace itk
00238 
00239 #ifndef ITK_MANUAL_INSTANTIATION
00240 #include "itkDeformableMesh3DFilter.txx"
00241 #endif
00242 
00243 #endif
00244 

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