itkSimpleFuzzyConnectednessRGBImageFilter.h

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/*=========================================================================

  Program:   Insight Segmentation & Registration Toolkit
  Module:    $RCSfile: itkSimpleFuzzyConnectednessRGBImageFilter.h,v $
  Language:  C++
  Date:      $Date: 2007/09/18 14:30:04 $
  Version:   $Revision: 1.2 $

  Copyright (c) Insight Software Consortium. All rights reserved.
  See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.

     This software is distributed WITHOUT ANY WARRANTY; without even 
     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
     PURPOSE.  See the above copyright notices for more information.

=========================================================================*/
#ifndef __itkSimpleFuzzyConnectednessRGBImageFilter_h
#define __itkSimpleFuzzyConnectednessRGBImageFilter_h

#include "itkImage.h"
#include "itkImageToImageFilter.h"
#include "itkSimpleFuzzyConnectednessImageFilterBase.h"
#include <vnl/vnl_matrix_fixed.h>

#include <queue>

namespace itk{

template <class TInputImage, class TOutputImage>
class ITK_EXPORT SimpleFuzzyConnectednessRGBImageFilter:
    public SimpleFuzzyConnectednessImageFilterBase<TInputImage,TOutputImage>
{
public:
  typedef SimpleFuzzyConnectednessRGBImageFilter       Self;
  typedef SimpleFuzzyConnectednessImageFilterBase<TInputImage,TOutputImage>
  Superclass;
  typedef SmartPointer <Self>  Pointer;
  typedef SmartPointer<const Self>  ConstPointer;

  itkNewMacro(Self);

  itkTypeMacro(SimpleFuzzyConnectednessRGBImageFilter,
               SimpleFuzzyConnectednessImageFilterBase);

  typedef typename TInputImage::PixelType PixelType;

  itkSetVectorMacro(Mean,double,3);
  void GetMean(double omean[3])
  {
    omean[0]=m_Mean[0];omean[1]=m_Mean[1];omean[2]=m_Mean[2];
  }
  void SetVariance(double ivar[3][3])
  {
    m_Variance[0][0]=ivar[0][0];m_Variance[0][1]=ivar[0][1];m_Variance[0][2]=ivar[0][2];
    m_Variance[1][0]=ivar[1][0];m_Variance[1][1]=ivar[1][1];m_Variance[1][2]=ivar[1][2];
    m_Variance[2][0]=ivar[2][0];m_Variance[2][1]=ivar[2][2];m_Variance[2][2]=ivar[2][2];
  }
  void GetVariance(double ovar[3][3])
  {
    ovar[0][0]=m_Variance[0][0];ovar[0][1]=m_Variance[0][1];ovar[0][2]=m_Variance[0][2];
    ovar[1][0]=m_Variance[1][0];ovar[1][1]=m_Variance[1][1];ovar[1][2]=m_Variance[1][2];
    ovar[2][0]=m_Variance[2][0];ovar[2][1]=m_Variance[2][1];ovar[2][2]=m_Variance[2][2];
  }
  itkSetVectorMacro(Diff_Mean,double,3);
  void GetDiff_Mean(double odmean[3])
  {
    odmean[0]=m_Diff_Mean[0];odmean[1]=m_Diff_Mean[1];odmean[2]=m_Diff_Mean[2];
  };
  void SetDiff_Variance(double idvar[3][3])
  {
    m_Diff_Variance[0][0]=idvar[0][0];m_Diff_Variance[0][1]=idvar[0][1];m_Diff_Variance[0][2]=idvar[0][2];
    m_Diff_Variance[1][0]=idvar[1][0];m_Diff_Variance[1][1]=idvar[1][1];m_Diff_Variance[1][2]=idvar[1][2];
    m_Diff_Variance[2][0]=idvar[2][0];m_Diff_Variance[2][1]=idvar[2][1];m_Diff_Variance[2][2]=idvar[2][2];
  }
  void GetDiff_Variance(double odvar[3][3])
  {
    odvar[0][0]=m_Diff_Variance[0][0];odvar[0][1]=m_Diff_Variance[0][1];odvar[0][2]=m_Diff_Variance[0][2];
    odvar[1][0]=m_Diff_Variance[1][0];odvar[1][1]=m_Diff_Variance[1][1];odvar[1][2]=m_Diff_Variance[1][2];
    odvar[2][0]=m_Diff_Variance[2][0];odvar[2][1]=m_Diff_Variance[2][1];odvar[2][2]=m_Diff_Variance[2][2];
  }

protected:
  SimpleFuzzyConnectednessRGBImageFilter();
  ~SimpleFuzzyConnectednessRGBImageFilter();
  virtual void PrintSelf(std::ostream& os, Indent indent) const;

  void GenerateData(void);
 
private:
  SimpleFuzzyConnectednessRGBImageFilter(const Self&); //purposely not implemented
  void operator=(const Self&); //purposely not implemented

  double m_Mean[3];
  double m_Variance[3][3]; 
  double m_Diff_Mean[3];
  double m_Diff_Variance[3][3];

  double m_VarianceInverse[3][3];
  double m_Diff_VarianceInverse[3][3];
  double m_VarianceDet;
  double m_Diff_VarianceDet;

  virtual double FuzzyAffinity(const PixelType f1, const PixelType f2);
};


} // end namespace itk.

#ifndef ITK_MANUAL_INSTANTIATION
#include "itkSimpleFuzzyConnectednessRGBImageFilter.txx"
#endif

#endif

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