Label pixels that are connected to a seed and lie within a range of values. More...

#include <itkConnectedThresholdImageFilter.h>

Inheritance diagram for itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >:

Collaboration diagram for itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >:

Public Types
enum	ConnectivityEnumType { FaceConnectivity, FullConnectivity }
typedef SmartPointer< const Self >	ConstPointer
typedef InputImageType::IndexType	IndexType
typedef InputImageType::ConstPointer	InputImageConstPointer
typedef InputImageType::PixelType	InputImagePixelType
typedef InputImageType::Pointer	InputImagePointer
typedef InputImageType::RegionType	InputImageRegionType
typedef TInputImage	InputImageType
typedef SimpleDataObjectDecorator < InputImagePixelType >	InputPixelObjectType
typedef OutputImageType::PixelType	OutputImagePixelType
typedef OutputImageType::Pointer	OutputImagePointer
typedef OutputImageType::RegionType	OutputImageRegionType
typedef TOutputImage	OutputImageType
typedef SmartPointer< Self >	Pointer
typedef std::vector< IndexType >	SeedContainerType
typedef ConnectedThresholdImageFilter	Self
typedef InputImageType::SizeType	SizeType
typedef ImageToImageFilter < TInputImage, TOutputImage >	Superclass
Public Member Functions
void	AddSeed (const IndexType &seed)
void	ClearSeeds ()
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
virtual InputImagePixelType	GetLower () const
virtual InputPixelObjectType *	GetLowerInput ()
virtual const char *	GetNameOfClass () const
virtual const SeedContainerType &	GetSeeds () const
virtual InputImagePixelType	GetUpper () const
virtual InputPixelObjectType *	GetUpperInput ()
void	PrintSelf (std::ostream &os, Indent indent) const
virtual void	SetLowerInput (const InputPixelObjectType *)
void	SetSeed (const IndexType &seed)
virtual void	SetUpperInput (const InputPixelObjectType *)
	typedef (Concept::Convertible< InputImagePixelType, OutputImagePixelType >) InputConvertibleToOutputCheck
	typedef (Concept::EqualityComparable< OutputImagePixelType >) OutputEqualityComparableCheck
	typedef (Concept::EqualityComparable< InputImagePixelType >) InputEqualityComparableCheck
	typedef (Concept::OStreamWritable< OutputImagePixelType >) OutputOStreamWritableCheck
	typedef (Concept::Convertible< int, InputImagePixelType >) IntConvertibleToInputCheck
	typedef (Concept::SameDimension< InputImageDimension, OutputImageDimension >) SameDimensionCheck

virtual void	SetReplaceValue (OutputImagePixelType _arg)
virtual OutputImagePixelType	GetReplaceValue () const

virtual void	SetUpper (InputImagePixelType)
virtual void	SetLower (InputImagePixelType)

virtual void	SetConnectivity (const ConnectivityEnumType _arg)
virtual ConnectivityEnumType	GetConnectivity () const
Static Public Member Functions
static Pointer	New ()
Static Public Attributes

static const unsigned int	InputImageDimension = TInputImage::ImageDimension
static const unsigned int	OutputImageDimension = TOutputImage::ImageDimension
Protected Member Functions
	ConnectedThresholdImageFilter ()
void	EnlargeOutputRequestedRegion (DataObject *output)
void	GenerateData ()
void	GenerateInputRequestedRegion ()
	~ConnectedThresholdImageFilter ()
Protected Attributes
ConnectivityEnumType	m_Connectivity
InputImagePixelType	m_Lower
OutputImagePixelType	m_ReplaceValue
SeedContainerType	m_Seeds
InputImagePixelType	m_Upper
Private Member Functions
	ConnectedThresholdImageFilter (const Self &)
void	operator= (const Self &)

Detailed Description

template<class TInputImage, class TOutputImage>
class itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >

Label pixels that are connected to a seed and lie within a range of values.

ConnectedThresholdImageFilter labels pixels with ReplaceValue that are connected to an initial Seed AND lie within a Lower and Upper threshold range.

Definition at line 37 of file itkConnectedThresholdImageFilter.h.

Member Typedef Documentation

template<class TInputImage , class TOutputImage >

typedef SmartPointer< const Self > itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::ConstPointer

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

Definition at line 45 of file itkConnectedThresholdImageFilter.h.

template<class TInputImage , class TOutputImage >

typedef InputImageType::IndexType itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::IndexType

Definition at line 59 of file itkConnectedThresholdImageFilter.h.

template<class TInputImage , class TOutputImage >

typedef InputImageType::ConstPointer itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::InputImageConstPointer

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

Definition at line 56 of file itkConnectedThresholdImageFilter.h.

template<class TInputImage , class TOutputImage >

typedef InputImageType::PixelType itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::InputImagePixelType

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

Definition at line 58 of file itkConnectedThresholdImageFilter.h.

template<class TInputImage , class TOutputImage >

typedef InputImageType::Pointer itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::InputImagePointer

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

Definition at line 55 of file itkConnectedThresholdImageFilter.h.

template<class TInputImage , class TOutputImage >

typedef InputImageType::RegionType itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::InputImageRegionType

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

Definition at line 57 of file itkConnectedThresholdImageFilter.h.

template<class TInputImage , class TOutputImage >

typedef TInputImage itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::InputImageType

Some convenient typedefs.

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

Definition at line 52 of file itkConnectedThresholdImageFilter.h.

template<class TInputImage , class TOutputImage >

typedef SimpleDataObjectDecorator< InputImagePixelType > itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::InputPixelObjectType

Type of DataObjects to use for scalar inputs

Definition at line 85 of file itkConnectedThresholdImageFilter.h.

template<class TInputImage , class TOutputImage >

typedef OutputImageType::PixelType itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::OutputImagePixelType

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

Definition at line 66 of file itkConnectedThresholdImageFilter.h.

template<class TInputImage , class TOutputImage >

typedef OutputImageType::Pointer itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::OutputImagePointer

Reimplemented from itk::ImageSource< TOutputImage >.

Definition at line 64 of file itkConnectedThresholdImageFilter.h.

template<class TInputImage , class TOutputImage >

typedef OutputImageType::RegionType itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::OutputImageRegionType

Superclass typedefs.

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

Definition at line 65 of file itkConnectedThresholdImageFilter.h.

template<class TInputImage , class TOutputImage >

typedef TOutputImage itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::OutputImageType

Some convenient typedefs.

Reimplemented from itk::ImageSource< TOutputImage >.

Definition at line 63 of file itkConnectedThresholdImageFilter.h.

template<class TInputImage , class TOutputImage >

typedef SmartPointer< Self > itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::Pointer

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

Definition at line 44 of file itkConnectedThresholdImageFilter.h.

template<class TInputImage , class TOutputImage >

typedef std::vector<IndexType> itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::SeedContainerType

Definition at line 60 of file itkConnectedThresholdImageFilter.h.

template<class TInputImage , class TOutputImage >

typedef ConnectedThresholdImageFilter itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::Self

Standard class typedefs.

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

Definition at line 42 of file itkConnectedThresholdImageFilter.h.

template<class TInputImage , class TOutputImage >

typedef InputImageType::SizeType itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::SizeType

Definition at line 61 of file itkConnectedThresholdImageFilter.h.

template<class TInputImage , class TOutputImage >

typedef ImageToImageFilter< TInputImage, TOutputImage > itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::Superclass

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

Definition at line 43 of file itkConnectedThresholdImageFilter.h.

Member Enumeration Documentation

template<class TInputImage , class TOutputImage >

enum itk::ConnectedThresholdImageFilter::ConnectivityEnumType

End concept checking Face connectivity is 4 connected in 2D, 6 connected in 3D, 2*n in ND Full connectivity is 8 connected in 2D, 26 connected in 3D, 3^n-1 in ND Default is to use FaceConnectivity.

Enumerator:

FaceConnectivity
FullConnectivity

Definition at line 139 of file itkConnectedThresholdImageFilter.h.

Constructor & Destructor Documentation

template<class TInputImage , class TOutputImage >

itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::ConnectedThresholdImageFilter ( ) [protected]

template<class TInputImage , class TOutputImage >

itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::~ConnectedThresholdImageFilter ( ) [inline, protected]

Definition at line 149 of file itkConnectedThresholdImageFilter.h.

template<class TInputImage , class TOutputImage >

itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::ConnectedThresholdImageFilter ( const Self & ) [private]

Member Function Documentation

template<class TInputImage , class TOutputImage >

void itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::AddSeed ( const IndexType & seed )

template<class TInputImage , class TOutputImage >

void itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::ClearSeeds ( )

Clear the seed list.

template<class TInputImage , class TOutputImage >

virtual::itk::LightObject::Pointer itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::CreateAnother ( void ) const [virtual]

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::Object.

template<class TInputImage , class TOutputImage >

void itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::EnlargeOutputRequestedRegion ( DataObject * ) [protected, virtual]

Give the process object a chance to indictate that it will produce more output than it was requested to produce. For example, many imaging filters must compute the entire output at once or can only produce output in complete slices. Such filters cannot handle smaller requested regions. These filters must provide an implementation of this method, setting the output requested region to the size they will produce. By default, a process object does not modify the size of the output requested region.

Reimplemented from itk::ProcessObject.

template<class TInputImage , class TOutputImage >

void itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::GenerateData ( ) [protected, virtual]

A version of GenerateData() specific for image processing filters. This implementation will split the processing across multiple threads. The buffer is allocated by this method. Then the BeforeThreadedGenerateData() method is called (if provided). Then, a series of threads are spawned each calling ThreadedGenerateData(). After all the threads have completed processing, the AfterThreadedGenerateData() method is called (if provided). If an image processing filter cannot be threaded, the filter should provide an implementation of GenerateData(). That implementation is responsible for allocating the output buffer. If a filter an be threaded, it should NOT provide a GenerateData() method but should provide a ThreadedGenerateData() instead.

See also:: ThreadedGenerateData()

Reimplemented from itk::ImageSource< TOutputImage >.

template<class TInputImage , class TOutputImage >

void itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::GenerateInputRequestedRegion ( ) [protected, virtual]

What is the input requested region that is required to produce the output requested region? The base assumption for image processing filters is that the input requested region can be set to match the output requested region. If a filter requires more input (for instance a filter that uses neighborhoods needs more input than output to avoid introducing artificial boundary conditions) or less input (for instance a magnify filter) will have to override this method. In doing so, it should call its superclass' implementation as its first step. Note that imaging filters operate differently than the classes to this point in the class hierachy. Up till now, the base assumption has been that the largest possible region will be requested of the input.

This implementation of GenerateInputRequestedRegion() only processes the inputs that are a subclass of the ImageBase<InputImageDimension>. If an input is another type of DataObject (including an Image of a different dimension), they are skipped by this method. The subclasses of ImageToImageFilter are responsible for providing an implementation of GenerateInputRequestedRegion() when there are multiple inputs of different types.

See also:: ProcessObject::GenerateInputRequestedRegion(), ImageSource::GenerateInputRequestedRegion()

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

template<class TInputImage , class TOutputImage >

virtual ConnectivityEnumType itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::GetConnectivity ( ) const [virtual]

Type of connectivity to use (fully connected OR 4(2D), 6(3D), 2*N(ND) connectivity)

template<class TInputImage , class TOutputImage >

virtual InputImagePixelType itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::GetLower ( ) const [virtual]

template<class TInputImage , class TOutputImage >

virtual InputPixelObjectType* itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::GetLowerInput ( ) [virtual]

template<class TInputImage , class TOutputImage >

virtual const char* itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::GetNameOfClass ( ) const [virtual]

Run-time type information (and related methods).

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

template<class TInputImage , class TOutputImage >

virtual OutputImagePixelType itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::GetReplaceValue ( ) const [virtual]

Set/Get value to replace thresholded pixels. Pixels that lie * within Lower and Upper (inclusive) will be replaced with this value. The default is 1.

template<class TInputImage , class TOutputImage >

virtual const SeedContainerType& itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::GetSeeds ( ) const [virtual]

Method to access seed container

template<class TInputImage , class TOutputImage >

virtual InputImagePixelType itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::GetUpper ( ) const [virtual]

Get Upper and Lower Threshold inputs as values

template<class TInputImage , class TOutputImage >

virtual InputPixelObjectType* itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::GetUpperInput ( ) [virtual]

Get Threshold inputs that are connected to the pipeline

template<class TInputImage , class TOutputImage >

static Pointer itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::New ( ) [static]

Method for creation through the object factory.

Reimplemented from itk::Object.

template<class TInputImage , class TOutputImage >

void itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::operator= ( const Self & ) [private]

PushBackInput(), PushFronInput() in the public section force the input to be the type expected by an ImageToImageFilter. However, these methods end of "hiding" the versions from the superclass (ProcessObject) whose arguments are DataObjects. Here, we re-expose the versions from ProcessObject to avoid warnings about hiding methods from the superclass.

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

template<class TInputImage , class TOutputImage >

void itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::PrintSelf	(	std::ostream &	os,
		Indent	indent
	)		const `[virtual]`

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

template<class TInputImage , class TOutputImage >

virtual void itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::SetConnectivity ( const ConnectivityEnumType _arg ) [virtual]

Type of connectivity to use (fully connected OR 4(2D), 6(3D), 2*N(ND) connectivity)

template<class TInputImage , class TOutputImage >

virtual void itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::SetLower ( InputImagePixelType ) [virtual]

Set Upper and Lower Threshold inputs as values

template<class TInputImage , class TOutputImage >

virtual void itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::SetLowerInput ( const InputPixelObjectType * ) [virtual]

template<class TInputImage , class TOutputImage >

virtual void itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::SetReplaceValue ( OutputImagePixelType _arg ) [virtual]

Set/Get value to replace thresholded pixels. Pixels that lie * within Lower and Upper (inclusive) will be replaced with this value. The default is 1.

template<class TInputImage , class TOutputImage >

void itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::SetSeed ( const IndexType & seed )

Set seed point.

template<class TInputImage , class TOutputImage >

virtual void itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::SetUpper ( InputImagePixelType ) [virtual]

Set Upper and Lower Threshold inputs as values

template<class TInputImage , class TOutputImage >

virtual void itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::SetUpperInput ( const InputPixelObjectType * ) [virtual]

Set Threshold inputs that are connected to the pipeline

template<class TInputImage , class TOutputImage >

itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::typedef ( Concept::SameDimension< InputImageDimension, OutputImageDimension > )

This class requires SameDimensionCheck in the form of ( Concept::SameDimension< InputImageDimension, OutputImageDimension > )

template<class TInputImage , class TOutputImage >

itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::typedef ( Concept::EqualityComparable< InputImagePixelType > )

This class requires InputEqualityComparableCheck in the form of ( Concept::EqualityComparable< InputImagePixelType > )

template<class TInputImage , class TOutputImage >

itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::typedef ( Concept::Convertible< InputImagePixelType, OutputImagePixelType > )

This class requires InputConvertibleToOutputCheck in the form of ( Concept::Convertible< InputImagePixelType, OutputImagePixelType > )

template<class TInputImage , class TOutputImage >

itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::typedef ( Concept::EqualityComparable< OutputImagePixelType > )

Begin concept checking This class requires OutputEqualityComparableCheck in the form of ( Concept::EqualityComparable< OutputImagePixelType > )

template<class TInputImage , class TOutputImage >

itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::typedef ( Concept::OStreamWritable< OutputImagePixelType > )

This class requires OutputOStreamWritableCheck in the form of ( Concept::OStreamWritable< OutputImagePixelType > )

template<class TInputImage , class TOutputImage >

itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::typedef ( Concept::Convertible< int, InputImagePixelType > )

This class requires IntConvertibleToInputCheck in the form of ( Concept::Convertible< int, InputImagePixelType > )

Member Data Documentation

template<class TInputImage , class TOutputImage >

const unsigned int itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::InputImageDimension = TInputImage::ImageDimension [static]

Image dimension constants

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

Definition at line 113 of file itkConnectedThresholdImageFilter.h.

template<class TInputImage , class TOutputImage >

ConnectivityEnumType itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::m_Connectivity [protected]

Definition at line 166 of file itkConnectedThresholdImageFilter.h.

template<class TInputImage , class TOutputImage >

InputImagePixelType itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::m_Lower [protected]

Definition at line 152 of file itkConnectedThresholdImageFilter.h.

template<class TInputImage , class TOutputImage >

OutputImagePixelType itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::m_ReplaceValue [protected]

Definition at line 155 of file itkConnectedThresholdImageFilter.h.

template<class TInputImage , class TOutputImage >

SeedContainerType itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::m_Seeds [protected]

Definition at line 150 of file itkConnectedThresholdImageFilter.h.

template<class TInputImage , class TOutputImage >

InputImagePixelType itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::m_Upper [protected]

Definition at line 153 of file itkConnectedThresholdImageFilter.h.

template<class TInputImage , class TOutputImage >

const unsigned int itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >::OutputImageDimension = TOutputImage::ImageDimension [static]

Image dimension constants

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

Definition at line 115 of file itkConnectedThresholdImageFilter.h.

The documentation for this class was generated from the following file:

itkConnectedThresholdImageFilter.h

Public Types

Public Member Functions

Static Public Member Functions

Static Public Attributes

Protected Member Functions

Protected Attributes

Private Member Functions

Detailed Description

template<class TInputImage, class TOutputImage> class itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >

Member Typedef Documentation

Member Enumeration Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation

template<class TInputImage, class TOutputImage>
class itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >