This class defins how to read Freesurfer binary surface file format. To use IO factory, define the suffix as *.fsb. More...

#include <itkFreeSurferBinaryMeshIO.h>

Inheritance diagram for itk::FreeSurferBinaryMeshIO:

Collaboration diagram for itk::FreeSurferBinaryMeshIO:

List of all members.

Public Types
typedef SmartPointer< const Self >	ConstPointer
typedef SmartPointer< Self >	Pointer
typedef FreeSurferBinaryMeshIO	Self
typedef Superclass::SizeValueType	SizeValueType
typedef Superclass::StreamOffsetType	StreamOffsetType
typedef MeshIOBase	Superclass
Public Member Functions
virtual bool	CanReadFile (const char *FileNameToRead)
virtual bool	CanWriteFile (const char *FileNameToWrite)
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
virtual const char *	GetNameOfClass () const
virtual void	ReadCellData (void *buffer)
virtual void	ReadCells (void *buffer)
virtual void	ReadMeshInformation ()
virtual void	ReadPointData (void *buffer)
virtual void	ReadPoints (void *buffer)
virtual void	Write ()
virtual void	WriteCellData (void *buffer)
virtual void	WriteCells (void *buffer)
virtual void	WriteMeshInformation ()
virtual void	WritePointData (void *buffer)
virtual void	WritePoints (void *buffer)
Static Public Member Functions
static Pointer	New ()
Protected Member Functions
void	CloseFile ()
	FreeSurferBinaryMeshIO ()
void	OpenFile ()
void	PrintSelf (std::ostream &os, Indent indent) const
template<typename TInput , typename TOutput >
void	ReadCellsBuffer (TInput input, TOutput output)
template<typename T >
void	WriteCells (T *buffer, std::ofstream &outputFile)
template<typename T >
void	WritePointData (T *buffer, std::ofstream &outputFile)
template<typename T >
void	WritePoints (T *buffer, std::ofstream &outputFile)
virtual	~FreeSurferBinaryMeshIO ()
Private Member Functions
	FreeSurferBinaryMeshIO (const Self &)
void	operator= (const Self &)
Private Attributes
StreamOffsetType	m_FilePosition
itk::uint32_t	m_FileTypeIdentifier
std::ifstream	m_InputFile

Detailed Description

This class defins how to read Freesurfer binary surface file format. To use IO factory, define the suffix as *.fsb.

Definition at line 37 of file itkFreeSurferBinaryMeshIO.h.

Member Typedef Documentation

typedef SmartPointer< const Self > itk::FreeSurferBinaryMeshIO::ConstPointer

Reimplemented from itk::MeshIOBase.

Definition at line 43 of file itkFreeSurferBinaryMeshIO.h.

typedef SmartPointer< Self > itk::FreeSurferBinaryMeshIO::Pointer

Reimplemented from itk::MeshIOBase.

Definition at line 44 of file itkFreeSurferBinaryMeshIO.h.

typedef FreeSurferBinaryMeshIO itk::FreeSurferBinaryMeshIO::Self

Standard class typedefs.

Reimplemented from itk::MeshIOBase.

Definition at line 41 of file itkFreeSurferBinaryMeshIO.h.

typedef Superclass::SizeValueType itk::FreeSurferBinaryMeshIO::SizeValueType

Reimplemented from itk::MeshIOBase.

Definition at line 46 of file itkFreeSurferBinaryMeshIO.h.

typedef Superclass::StreamOffsetType itk::FreeSurferBinaryMeshIO::StreamOffsetType

Type for representing size of bytes, and or positions along a file

Reimplemented from itk::MeshIOBase.

Definition at line 47 of file itkFreeSurferBinaryMeshIO.h.

typedef MeshIOBase itk::FreeSurferBinaryMeshIO::Superclass

Reimplemented from itk::MeshIOBase.

Definition at line 42 of file itkFreeSurferBinaryMeshIO.h.

Constructor & Destructor Documentation

itk::FreeSurferBinaryMeshIO::FreeSurferBinaryMeshIO ( ) [protected]

virtual itk::FreeSurferBinaryMeshIO::~FreeSurferBinaryMeshIO ( ) [inline, protected, virtual]

Definition at line 169 of file itkFreeSurferBinaryMeshIO.h.

itk::FreeSurferBinaryMeshIO::FreeSurferBinaryMeshIO ( const Self & ) [private]

Member Function Documentation

virtual bool itk::FreeSurferBinaryMeshIO::CanReadFile ( const char * FileNameToRead ) [virtual]

Determine if the file can be read with this MeshIO implementation.

Parameters:

FileNameToRead The name of the file to test for reading.

Postcondition:: Sets classes MeshIOBase::m_FileName variable to be FileNameToWrite

Returns:: Returns true if this MeshIO can read the file specified.

Implements itk::MeshIOBase.

virtual bool itk::FreeSurferBinaryMeshIO::CanWriteFile ( const char * FileNameToWrite ) [virtual]

Determine if the file can be written with this MeshIO implementation.

Parameters:

FileNameToWrite The name of the file to test for writing.

Postcondition:: Sets classes MeshIOBase::m_FileName variable to be FileNameToWrite

Returns:: Returns true if this MeshIO can write the file specified.

Implements itk::MeshIOBase.

void itk::FreeSurferBinaryMeshIO::CloseFile ( ) [protected]

virtual::itk::LightObject::Pointer itk::FreeSurferBinaryMeshIO::CreateAnother ( void ) const [virtual]

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::LightProcessObject.

virtual const char* itk::FreeSurferBinaryMeshIO::GetNameOfClass ( ) const [virtual]

Run-time type information (and related methods).

Reimplemented from itk::MeshIOBase.

static Pointer itk::FreeSurferBinaryMeshIO::New ( ) [static]

Method for creation through the object factory.

Reimplemented from itk::LightProcessObject.

void itk::FreeSurferBinaryMeshIO::OpenFile ( ) [protected]

void itk::FreeSurferBinaryMeshIO::operator= ( const Self & ) [private]

This method causes the filter to generate its output.

Reimplemented from itk::MeshIOBase.

void itk::FreeSurferBinaryMeshIO::PrintSelf	(	std::ostream &	os,
		Indent	indent
	)		const `[protected, virtual]`

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::MeshIOBase.

virtual void itk::FreeSurferBinaryMeshIO::ReadCellData ( void * buffer ) [virtual]

Implements itk::MeshIOBase.

virtual void itk::FreeSurferBinaryMeshIO::ReadCells ( void * buffer ) [virtual]

Implements itk::MeshIOBase.

template<typename TInput , typename TOutput >

void itk::FreeSurferBinaryMeshIO::ReadCellsBuffer	(	TInput *	input,
		TOutput *	output
	)		`[inline, protected]`

Read cells from a data buffer, used when writting mesh

point identifiers start from the third elements, first element is cellType, the second is numberOfPoints.

Reimplemented from itk::MeshIOBase.

Definition at line 135 of file itkFreeSurferBinaryMeshIO.h.

virtual void itk::FreeSurferBinaryMeshIO::ReadMeshInformation ( ) [virtual]

Set the spacing and dimension information for the set filename.

Implements itk::MeshIOBase.

virtual void itk::FreeSurferBinaryMeshIO::ReadPointData ( void * buffer ) [virtual]

Implements itk::MeshIOBase.

virtual void itk::FreeSurferBinaryMeshIO::ReadPoints ( void * buffer ) [virtual]

Reads the data from disk into the memory buffer provided.

Implements itk::MeshIOBase.

virtual void itk::FreeSurferBinaryMeshIO::Write ( ) [virtual]

Implements itk::MeshIOBase.

virtual void itk::FreeSurferBinaryMeshIO::WriteCellData ( void * buffer ) [virtual]

Implements itk::MeshIOBase.

template<typename T >

void itk::FreeSurferBinaryMeshIO::WriteCells	(	T *	buffer,
		std::ofstream &	outputFile
	)		`[inline, protected]`

Write cells to utput stream

Definition at line 121 of file itkFreeSurferBinaryMeshIO.h.

References itk::uint32_t.

virtual void itk::FreeSurferBinaryMeshIO::WriteCells ( void * buffer ) [virtual]

Implements itk::MeshIOBase.

virtual void itk::FreeSurferBinaryMeshIO::WriteMeshInformation ( ) [virtual]

Set the spacing and dimension information for the set filename.

Implements itk::MeshIOBase.

virtual void itk::FreeSurferBinaryMeshIO::WritePointData ( void * buffer ) [virtual]

Implements itk::MeshIOBase.

template<typename T >

void itk::FreeSurferBinaryMeshIO::WritePointData	(	T *	buffer,
		std::ofstream &	outputFile
	)		`[inline, protected]`

Write points to output stream

Definition at line 154 of file itkFreeSurferBinaryMeshIO.h.

virtual void itk::FreeSurferBinaryMeshIO::WritePoints ( void * buffer ) [virtual]

Writes the data to disk from the memory buffer provided. Make sure that the IORegions has been set properly.

Implements itk::MeshIOBase.

template<typename T >

void itk::FreeSurferBinaryMeshIO::WritePoints	(	T *	buffer,
		std::ofstream &	outputFile
	)		`[inline, protected]`

Write points to output stream

Definition at line 103 of file itkFreeSurferBinaryMeshIO.h.

Member Data Documentation

StreamOffsetType itk::FreeSurferBinaryMeshIO::m_FilePosition [private]

Definition at line 181 of file itkFreeSurferBinaryMeshIO.h.

itk::uint32_t itk::FreeSurferBinaryMeshIO::m_FileTypeIdentifier [private]

Definition at line 182 of file itkFreeSurferBinaryMeshIO.h.

std::ifstream itk::FreeSurferBinaryMeshIO::m_InputFile [private]

Definition at line 183 of file itkFreeSurferBinaryMeshIO.h.

The documentation for this class was generated from the following file:

itkFreeSurferBinaryMeshIO.h

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Private Member Functions

Private Attributes

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation