keep N objects according to their shape attributes More...

#include <itkLabelShapeKeepNObjectsImageFilter.h>

Inheritance diagram for itk::LabelShapeKeepNObjectsImageFilter< TInputImage >:

Collaboration diagram for itk::LabelShapeKeepNObjectsImageFilter< TInputImage >:

Public Types
typedef LabelObjectType::AttributeType	AttributeType
typedef LabelMapToLabelImageFilter < LabelMapType, OutputImageType >	BinarizerType
typedef SmartPointer< const Self >	ConstPointer
typedef InputImageType::ConstPointer	InputImageConstPointer
typedef InputImageType::PixelType	InputImagePixelType
typedef InputImageType::Pointer	InputImagePointer
typedef InputImageType::RegionType	InputImageRegionType
typedef TInputImage	InputImageType
typedef ShapeKeepNObjectsLabelMapFilter < LabelMapType >	KeepNObjectsType
typedef LabelImageToLabelMapFilter < InputImageType, LabelMapType >	LabelizerType
typedef LabelMap< LabelObjectType >	LabelMapType
typedef ShapeLabelObject < InputImagePixelType, itkGetStaticConstMacro(ImageDimension) >	LabelObjectType
typedef ShapeLabelMapFilter < LabelMapType, ShapeLabelFilterOutput >	LabelObjectValuatorType
typedef OutputImageType::ConstPointer	OutputImageConstPointer
typedef OutputImageType::PixelType	OutputImagePixelType
typedef OutputImageType::Pointer	OutputImagePointer
typedef OutputImageType::RegionType	OutputImageRegionType
typedef TInputImage	OutputImageType
typedef SmartPointer< Self >	Pointer
typedef LabelShapeKeepNObjectsImageFilter	Self
typedef Image< typename OutputImageType::PixelType, itkGetStaticConstMacro(OutputImageDimension) >	ShapeLabelFilterOutput
typedef ImageToImageFilter < TInputImage, TInputImage >	Superclass
Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
virtual const char *	GetNameOfClass () const
	typedef (Concept::Convertible< int, InputImagePixelType >) IntConvertibleToInputCheck
	typedef (Concept::EqualityComparable< InputImagePixelType >) InputEqualityComparableCheck
	typedef (Concept::OStreamWritable< InputImagePixelType >) InputOStreamWritableCheck

virtual void	SetBackgroundValue (OutputImagePixelType _arg)
virtual OutputImagePixelType	GetBackgroundValue () const

virtual SizeValueType	GetNumberOfObjects () const
virtual void	SetNumberOfObjects (SizeValueType _arg)

virtual bool	GetReverseOrdering () const
virtual void	SetReverseOrdering (bool _arg)
virtual void	ReverseOrderingOn ()
virtual void	ReverseOrderingOff ()

virtual AttributeType	GetAttribute () const
virtual void	SetAttribute (AttributeType _arg)
void	SetAttribute (const std::string &s)
Static Public Member Functions
static Pointer	New ()
Static Public Attributes

static const unsigned int	InputImageDimension = TInputImage::ImageDimension
static const unsigned int	OutputImageDimension = TInputImage::ImageDimension
static const unsigned int	ImageDimension = TInputImage::ImageDimension
Protected Member Functions
void	EnlargeOutputRequestedRegion (DataObject *)
void	GenerateData ()
void	GenerateInputRequestedRegion ()
	LabelShapeKeepNObjectsImageFilter ()
void	PrintSelf (std::ostream &os, Indent indent) const
	~LabelShapeKeepNObjectsImageFilter ()
Private Member Functions
	LabelShapeKeepNObjectsImageFilter (const Self &)
void	operator= (const Self &)
Private Attributes
AttributeType	m_Attribute
OutputImagePixelType	m_BackgroundValue
SizeValueType	m_NumberOfObjects
bool	m_ReverseOrdering

Detailed Description

template<class TInputImage>
class itk::LabelShapeKeepNObjectsImageFilter< TInputImage >

keep N objects according to their shape attributes

LabelShapeKeepNObjectsImageFilter keep the N objects in a labeled image with the highest (or lowest) attribute value. The attributes are the ones of the ShapeLabelObject.

Author:: Gaetan Lehmann. Biologie du Developpement et de la Reproduction, INRA de Jouy-en-Josas, France.

This implementation was taken from the Insight Journal paper: http://hdl.handle.net/1926/584 or http://www.insight-journal.org/browse/publication/176

See also:: ShapeLabelObject, BinaryShapeKeepNObjectsImageFilter, LabelStatisticsKeepNObjectsImageFilter

Wiki Examples:

All Examples

Keep only regions that rank above a certain level of a particular property

Definition at line 51 of file itkLabelShapeKeepNObjectsImageFilter.h.

Member Typedef Documentation

template<class TInputImage >

typedef LabelObjectType::AttributeType itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::AttributeType

Definition at line 89 of file itkLabelShapeKeepNObjectsImageFilter.h.

template<class TInputImage >

typedef LabelMapToLabelImageFilter< LabelMapType, OutputImageType > itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::BinarizerType

Definition at line 91 of file itkLabelShapeKeepNObjectsImageFilter.h.

template<class TInputImage >

typedef SmartPointer< const Self > itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::ConstPointer

Reimplemented from itk::ImageToImageFilter< TInputImage, TInputImage >.

Definition at line 59 of file itkLabelShapeKeepNObjectsImageFilter.h.

template<class TInputImage >

typedef InputImageType::ConstPointer itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::InputImageConstPointer

Reimplemented from itk::ImageToImageFilter< TInputImage, TInputImage >.

Definition at line 65 of file itkLabelShapeKeepNObjectsImageFilter.h.

template<class TInputImage >

typedef InputImageType::PixelType itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::InputImagePixelType

Reimplemented from itk::ImageToImageFilter< TInputImage, TInputImage >.

Definition at line 67 of file itkLabelShapeKeepNObjectsImageFilter.h.

template<class TInputImage >

typedef InputImageType::Pointer itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::InputImagePointer

Reimplemented from itk::ImageToImageFilter< TInputImage, TInputImage >.

Definition at line 64 of file itkLabelShapeKeepNObjectsImageFilter.h.

template<class TInputImage >

typedef InputImageType::RegionType itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::InputImageRegionType

Reimplemented from itk::ImageToImageFilter< TInputImage, TInputImage >.

Definition at line 66 of file itkLabelShapeKeepNObjectsImageFilter.h.

template<class TInputImage >

typedef TInputImage itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::InputImageType

Some convenient typedefs.

Reimplemented from itk::ImageToImageFilter< TInputImage, TInputImage >.

Definition at line 62 of file itkLabelShapeKeepNObjectsImageFilter.h.

template<class TInputImage >

typedef ShapeKeepNObjectsLabelMapFilter< LabelMapType > itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::KeepNObjectsType

Definition at line 90 of file itkLabelShapeKeepNObjectsImageFilter.h.

template<class TInputImage >

typedef LabelImageToLabelMapFilter< InputImageType, LabelMapType > itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::LabelizerType

Definition at line 84 of file itkLabelShapeKeepNObjectsImageFilter.h.

template<class TInputImage >

typedef LabelMap< LabelObjectType > itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::LabelMapType

Definition at line 83 of file itkLabelShapeKeepNObjectsImageFilter.h.

template<class TInputImage >

typedef ShapeLabelObject< InputImagePixelType, itkGetStaticConstMacro(ImageDimension) > itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::LabelObjectType

Definition at line 82 of file itkLabelShapeKeepNObjectsImageFilter.h.

template<class TInputImage >

typedef ShapeLabelMapFilter< LabelMapType, ShapeLabelFilterOutput > itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::LabelObjectValuatorType

Definition at line 88 of file itkLabelShapeKeepNObjectsImageFilter.h.

template<class TInputImage >

typedef OutputImageType::ConstPointer itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::OutputImageConstPointer

Definition at line 69 of file itkLabelShapeKeepNObjectsImageFilter.h.

template<class TInputImage >

typedef OutputImageType::PixelType itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::OutputImagePixelType

Reimplemented from itk::ImageToImageFilter< TInputImage, TInputImage >.

Definition at line 71 of file itkLabelShapeKeepNObjectsImageFilter.h.

template<class TInputImage >

typedef OutputImageType::Pointer itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::OutputImagePointer

Reimplemented from itk::ImageSource< TInputImage >.

Definition at line 68 of file itkLabelShapeKeepNObjectsImageFilter.h.

template<class TInputImage >

typedef OutputImageType::RegionType itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::OutputImageRegionType

Superclass typedefs.

Reimplemented from itk::ImageToImageFilter< TInputImage, TInputImage >.

Definition at line 70 of file itkLabelShapeKeepNObjectsImageFilter.h.

template<class TInputImage >

typedef TInputImage itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::OutputImageType

Some convenient typedefs.

Reimplemented from itk::ImageSource< TInputImage >.

Definition at line 63 of file itkLabelShapeKeepNObjectsImageFilter.h.

template<class TInputImage >

typedef SmartPointer< Self > itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::Pointer

Reimplemented from itk::ImageToImageFilter< TInputImage, TInputImage >.

Definition at line 58 of file itkLabelShapeKeepNObjectsImageFilter.h.

template<class TInputImage >

typedef LabelShapeKeepNObjectsImageFilter itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::Self

Standard class typedefs.

Reimplemented from itk::ImageToImageFilter< TInputImage, TInputImage >.

Definition at line 56 of file itkLabelShapeKeepNObjectsImageFilter.h.

template<class TInputImage >

typedef Image< typename OutputImageType::PixelType, itkGetStaticConstMacro(OutputImageDimension) > itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::ShapeLabelFilterOutput

Definition at line 86 of file itkLabelShapeKeepNObjectsImageFilter.h.

template<class TInputImage >

typedef ImageToImageFilter< TInputImage, TInputImage > itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::Superclass

Reimplemented from itk::ImageToImageFilter< TInputImage, TInputImage >.

Definition at line 57 of file itkLabelShapeKeepNObjectsImageFilter.h.

Constructor & Destructor Documentation

template<class TInputImage >

itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::LabelShapeKeepNObjectsImageFilter ( ) [protected]

template<class TInputImage >

itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::~LabelShapeKeepNObjectsImageFilter ( ) [inline, protected]

Definition at line 151 of file itkLabelShapeKeepNObjectsImageFilter.h.

template<class TInputImage >

itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::LabelShapeKeepNObjectsImageFilter ( const Self & ) [private]

Member Function Documentation

template<class TInputImage >

virtual::itk::LightObject::Pointer itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::CreateAnother ( void ) const [virtual]

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::Object.

template<class TInputImage >

void itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::EnlargeOutputRequestedRegion ( DataObject * ) [protected, virtual]

LabelShapeKeepNObjectsImageFilter will produce the entire output.

Reimplemented from itk::ProcessObject.

template<class TInputImage >

void itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::GenerateData ( ) [protected, virtual]

Single-threaded version of GenerateData. This filter delegates to GrayscaleGeodesicErodeImageFilter.

Reimplemented from itk::ImageSource< TInputImage >.

template<class TInputImage >

void itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::GenerateInputRequestedRegion ( ) [protected, virtual]

LabelShapeKeepNObjectsImageFilter needs the entire input be available. Thus, it needs to provide an implementation of GenerateInputRequestedRegion().

Reimplemented from itk::ImageToImageFilter< TInputImage, TInputImage >.

template<class TInputImage >

virtual AttributeType itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::GetAttribute ( ) const [virtual]

Set/Get the attribute to use to select the object to keep. The default is "Size".

template<class TInputImage >

virtual OutputImagePixelType itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::GetBackgroundValue ( ) const [virtual]

End concept checking Set/Get the value used as "background" in the output image. Defaults to NumericTraits<PixelType>::NonpositiveMin().

template<class TInputImage >

virtual const char* itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::GetNameOfClass ( ) const [virtual]

Runtime information support.

Reimplemented from itk::ImageToImageFilter< TInputImage, TInputImage >.

template<class TInputImage >

virtual SizeValueType itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::GetNumberOfObjects ( ) const [virtual]

Set/Get the number of objects to keep

template<class TInputImage >

virtual bool itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::GetReverseOrdering ( ) const [virtual]

Set/Get the ordering of the objects. By default, the ones with the highest value are kept. Turming ReverseOrdering to true make this filter keep the objects with the smallest values

template<class TInputImage >

static Pointer itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::New ( ) [static]

Standard New method.

Reimplemented from itk::Object.

template<class TInputImage >

void itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::operator= ( const Self & ) [private]

PushBackInput(), PushFronInput() in the public section force the input to be the type expected by an ImageToImageFilter. However, these methods end of "hiding" the versions from the superclass (ProcessObject) whose arguments are DataObjects. Here, we re-expose the versions from ProcessObject to avoid warnings about hiding methods from the superclass.

Reimplemented from itk::ImageToImageFilter< TInputImage, TInputImage >.

template<class TInputImage >

void itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::PrintSelf	(	std::ostream &	os,
		Indent	indent
	)		const `[protected, virtual]`

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::ImageToImageFilter< TInputImage, TInputImage >.

template<class TInputImage >

virtual void itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::ReverseOrderingOff ( ) [virtual]

Set/Get the ordering of the objects. By default, the ones with the highest value are kept. Turming ReverseOrdering to true make this filter keep the objects with the smallest values

template<class TInputImage >

virtual void itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::ReverseOrderingOn ( ) [virtual]

Set/Get the ordering of the objects. By default, the ones with the highest value are kept. Turming ReverseOrdering to true make this filter keep the objects with the smallest values

template<class TInputImage >

virtual void itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::SetAttribute ( AttributeType _arg ) [virtual]

Set/Get the attribute to use to select the object to keep. The default is "Size".

template<class TInputImage >

void itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::SetAttribute ( const std::string & s ) [inline]

Set/Get the attribute to use to select the object to keep. The default is "Size".

Definition at line 143 of file itkLabelShapeKeepNObjectsImageFilter.h.

template<class TInputImage >

virtual void itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::SetBackgroundValue ( OutputImagePixelType _arg ) [virtual]

End concept checking Set/Get the value used as "background" in the output image. Defaults to NumericTraits<PixelType>::NonpositiveMin().

template<class TInputImage >

virtual void itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::SetNumberOfObjects ( SizeValueType _arg ) [virtual]

Set/Get the number of objects to keep

template<class TInputImage >

virtual void itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::SetReverseOrdering ( bool _arg ) [virtual]

Set/Get the ordering of the objects. By default, the ones with the highest value are kept. Turming ReverseOrdering to true make this filter keep the objects with the smallest values

template<class TInputImage >

itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::typedef ( Concept::OStreamWritable< InputImagePixelType > )

This class requires InputOStreamWritableCheck in the form of ( Concept::OStreamWritable< InputImagePixelType > )

template<class TInputImage >

itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::typedef ( Concept::EqualityComparable< InputImagePixelType > )

Begin concept checking This class requires InputEqualityComparableCheck in the form of ( Concept::EqualityComparable< InputImagePixelType > )

template<class TInputImage >

itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::typedef ( Concept::Convertible< int, InputImagePixelType > )

This class requires IntConvertibleToInputCheck in the form of ( Concept::Convertible< int, InputImagePixelType > )

Member Data Documentation

template<class TInputImage >

const unsigned int itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::ImageDimension = TInputImage::ImageDimension [static]

ImageDimension constants

Definition at line 79 of file itkLabelShapeKeepNObjectsImageFilter.h.

template<class TInputImage >

const unsigned int itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::InputImageDimension = TInputImage::ImageDimension [static]

ImageDimension constants

Reimplemented from itk::ImageToImageFilter< TInputImage, TInputImage >.

Definition at line 75 of file itkLabelShapeKeepNObjectsImageFilter.h.

template<class TInputImage >

AttributeType itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::m_Attribute [private]

Definition at line 173 of file itkLabelShapeKeepNObjectsImageFilter.h.

template<class TInputImage >

OutputImagePixelType itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::m_BackgroundValue [private]

Definition at line 170 of file itkLabelShapeKeepNObjectsImageFilter.h.

template<class TInputImage >

SizeValueType itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::m_NumberOfObjects [private]

Definition at line 171 of file itkLabelShapeKeepNObjectsImageFilter.h.

template<class TInputImage >

bool itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::m_ReverseOrdering [private]

Definition at line 172 of file itkLabelShapeKeepNObjectsImageFilter.h.

template<class TInputImage >

const unsigned int itk::LabelShapeKeepNObjectsImageFilter< TInputImage >::OutputImageDimension = TInputImage::ImageDimension [static]

ImageDimension constants

Reimplemented from itk::ImageToImageFilter< TInputImage, TInputImage >.

Definition at line 77 of file itkLabelShapeKeepNObjectsImageFilter.h.

The documentation for this class was generated from the following file:

itkLabelShapeKeepNObjectsImageFilter.h

Public Types

Public Member Functions

Static Public Member Functions

Static Public Attributes

Protected Member Functions

Private Member Functions

Private Attributes

Detailed Description

template<class TInputImage> class itk::LabelShapeKeepNObjectsImageFilter< TInputImage >

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation

template<class TInputImage>
class itk::LabelShapeKeepNObjectsImageFilter< TInputImage >