Base class for different types of cellular groups, including bacterial colonies and pluricellular organisms. More...

#include <itkBioCellularAggregate.h>

Inheritance diagram for itk::bio::CellularAggregate< NSpaceDimension >:

Collaboration diagram for itk::bio::CellularAggregate< NSpaceDimension >:

Public Types
typedef Cell< NSpaceDimension >	BioCellType
typedef MeshType::CellAutoPointer	CellAutoPointer
typedef CellInterface < typename MeshType::CellPixelType, typename MeshType::CellTraits >	CellInterfaceType
typedef double	CellPixelType
typedef PointDataContainer::ConstIterator	CellsConstIterator
typedef PointDataContainer::Iterator	CellsIterator
typedef SmartPointer< const Self >	ConstPointer
typedef float	ImagePixelType
typedef MeshType::ConstPointer	MeshConstPointer
typedef MeshType::Pointer	MeshPointer
typedef DefaultDynamicMeshTraits < PointPixelType, NSpaceDimension, NSpaceDimension, double, double, CellPixelType >	MeshTraits
typedef Mesh< PointPixelType, NSpaceDimension, MeshTraits >	MeshType
typedef MeshType::PointDataContainer	PointDataContainer
typedef SmartPointer< Self >	Pointer
typedef BioCellType *	PointPixelType
typedef PointsContainer::ConstIterator	PointsConstIterator
typedef MeshType::PointsContainer	PointsContainer
typedef PointsContainer::Iterator	PointsIterator
typedef MeshType::PointType	PointType
typedef CellularAggregate	Self
typedef SubstrateType::Pointer	SubstratePointer
typedef std::vector < SubstratePointer >	SubstratesVector
typedef Image< ImagePixelType, NSpaceDimension >	SubstrateType
typedef ImagePixelType	SubstrateValueType
typedef CellularAggregateBase	Superclass
typedef BioCellType::VectorType	VectorType
typedef VoronoiRegionsContainer::ConstIterator	VoronoiConstIterator
typedef VoronoiRegionsContainer::Iterator	VoronoiIterator
typedef VoronoiRegionType::SelfAutoPointer	VoronoiRegionAutoPointer
typedef MeshType::CellsContainer	VoronoiRegionsContainer
typedef PolygonCell < CellInterfaceType >	VoronoiRegionType
Public Member Functions
virtual void	Add (CellBase *cell)
virtual void	Add (CellBase *cell, const VectorType &perturbation)
virtual void	Add (CellBase cellA, CellBase cellB, double perturbationLength)
virtual void	AddSubstrate (SubstrateType *substrate)
virtual void	AdvanceTimeStep (void)
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
void	DumpContent (std::ostream &os) const
virtual MeshType *	GetMesh ()
virtual const MeshType *	GetMesh ()
virtual const char *	GetNameOfClass () const
unsigned int	GetNumberOfCells (void) const
virtual SubstratesVector &	GetSubstrates (void)
virtual SubstrateValueType	GetSubstrateValue (IdentifierType cellId, unsigned int substrateId) const
virtual void	GetVoronoi (IdentifierType cellId, VoronoiRegionAutoPointer &) const
virtual void	KillAll (void)
virtual void	Remove (CellBase *cell)
virtual void	SetEgg (BioCellType *cell, const PointType &position)
void	SetGrowthRadiusIncrement (double value)
void	SetGrowthRadiusLimit (double value)
Static Public Member Functions
static unsigned int	GetDimension ()
static Pointer	New ()
Static Public Attributes
static const unsigned int	SpaceDimension = NSpaceDimension
Protected Member Functions
	CellularAggregate ()
	CellularAggregate (const Self &)
virtual void	ClearForces (void)
virtual void	ComputeClosestPoints (void)
virtual void	ComputeForces (void)
void	operator= (const Self &)
void	PrintSelf (std::ostream &os, Indent indent) const
virtual void	UpdatePositions (void)
virtual	~CellularAggregate ()
Private Attributes
SizeValueType	m_ClosestPointComputationInterval
double	m_FrictionForce
SizeValueType	m_Iteration
MeshPointer	m_Mesh
SubstratesVector	m_Substrates

Detailed Description

template<unsigned int NSpaceDimension = 3>
class itk::bio::CellularAggregate< NSpaceDimension >

Base class for different types of cellular groups, including bacterial colonies and pluricellular organisms.

This class represents an aggregation of bio::Cell objects.

Definition at line 43 of file itkBioCellularAggregate.h.