itkMattesMutualInformationImageToImageMetric.h

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 *
 *  Copyright Insight Software Consortium
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
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 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef __itkMattesMutualInformationImageToImageMetric_h
#define __itkMattesMutualInformationImageToImageMetric_h

#include "itkImageToImageMetric.h"
#include "itkPoint.h"
#include "itkIndex.h"
#include "itkBSplineDerivativeKernelFunction.h"
#include "itkArray2D.h"

namespace itk
{
template <class TFixedImage, class TMovingImage>
class ITK_EXPORT MattesMutualInformationImageToImageMetric:
  public ImageToImageMetric<TFixedImage, TMovingImage>
{
public:

  typedef MattesMutualInformationImageToImageMetric     Self;
  typedef ImageToImageMetric<TFixedImage, TMovingImage> Superclass;
  typedef SmartPointer<Self>                            Pointer;
  typedef SmartPointer<const Self>                      ConstPointer;

  itkNewMacro(Self);

  itkTypeMacro(MattesMutualInformationImageToImageMetric,
               ImageToImageMetric);

  typedef typename Superclass::TransformType                  TransformType;
  typedef typename Superclass::TransformPointer               TransformPointer;
  typedef typename Superclass::TransformJacobianType          TransformJacobianType;
  typedef typename Superclass::InterpolatorType               InterpolatorType;
  typedef typename Superclass::MeasureType                    MeasureType;
  typedef typename Superclass::DerivativeType                 DerivativeType;
  typedef typename Superclass::ParametersType                 ParametersType;
  typedef typename Superclass::FixedImageType                 FixedImageType;
  typedef typename Superclass::MovingImageType                MovingImageType;
  typedef typename Superclass::MovingImagePointType           MovingImagePointType;
  typedef typename Superclass::FixedImageConstPointer         FixedImageConstPointer;
  typedef typename Superclass::MovingImageConstPointer        MovingImageConstPointer;
  typedef typename Superclass::BSplineTransformWeightsType    BSplineTransformWeightsType;
  typedef typename Superclass::BSplineTransformIndexArrayType BSplineTransformIndexArrayType;

  typedef typename Superclass::CoordinateRepresentationType CoordinateRepresentationType;
  typedef typename Superclass::FixedImageSampleContainer    FixedImageSampleContainer;
  typedef typename Superclass::ImageDerivativesType         ImageDerivativesType;
  typedef typename Superclass::WeightsValueType             WeightsValueType;
  typedef typename Superclass::IndexValueType               IndexValueType;

  typedef typename FixedImageType::OffsetValueType OffsetValueType;

  itkStaticConstMacro(MovingImageDimension, unsigned int,
                      MovingImageType::ImageDimension);

  virtual void Initialize(void)
  throw ( ExceptionObject );

  MeasureType GetValue(const ParametersType & parameters) const;

  void GetDerivative(const ParametersType & parameters, DerivativeType & Derivative) const;

  void GetValueAndDerivative(const ParametersType & parameters, MeasureType & Value, DerivativeType & Derivative) const;

  itkSetClampMacro( NumberOfHistogramBins, SizeValueType,
                    5, NumericTraits<SizeValueType>::max() );
  itkGetConstReferenceMacro(NumberOfHistogramBins, SizeValueType);

  itkSetMacro(UseExplicitPDFDerivatives, bool);
  itkGetConstReferenceMacro(UseExplicitPDFDerivatives, bool);
  itkBooleanMacro(UseExplicitPDFDerivatives);

  typedef float PDFValueType;

  typedef Image<PDFValueType, 2> JointPDFType;
  typedef Image<PDFValueType, 3> JointPDFDerivativesType;

  const typename JointPDFType::Pointer GetJointPDF () const
    {
    if( this->m_ThreaderJointPDF.size() == 0 )
      {
      return JointPDFType::Pointer(NULL);
      }
    return this->m_ThreaderJointPDF[0];
    }

  const typename JointPDFDerivativesType::Pointer GetJointPDFDerivatives () const
    {
    if( this->m_ThreaderJointPDFDerivatives.size() == 0 )
      {
      return JointPDFDerivativesType::Pointer(NULL);
      }
    return this->m_ThreaderJointPDFDerivatives[0];
    }
protected:

  MattesMutualInformationImageToImageMetric();
  virtual ~MattesMutualInformationImageToImageMetric();
  void PrintSelf(std::ostream & os, Indent indent) const;

private:

  // purposely not implemented
  MattesMutualInformationImageToImageMetric(const Self &);
  // purposely not implemented
  void operator=(const Self &);

  typedef JointPDFType::IndexType             JointPDFIndexType;
  typedef JointPDFType::PixelType             JointPDFValueType;
  typedef JointPDFType::RegionType            JointPDFRegionType;
  typedef JointPDFType::SizeType              JointPDFSizeType;
  typedef JointPDFDerivativesType::IndexType  JointPDFDerivativesIndexType;
  typedef JointPDFDerivativesType::PixelType  JointPDFDerivativesValueType;
  typedef JointPDFDerivativesType::RegionType JointPDFDerivativesRegionType;
  typedef JointPDFDerivativesType::SizeType   JointPDFDerivativesSizeType;

  typedef BSplineKernelFunction<3>           CubicBSplineFunctionType;
  typedef BSplineDerivativeKernelFunction<3> CubicBSplineDerivativeFunctionType;

  void ComputeFixedImageParzenWindowIndices( FixedImageSampleContainer & samples);

  void ComputePDFDerivatives(ThreadIdType threadID, unsigned int sampleNumber, int movingImageParzenWindowIndex,
                                     const ImageDerivativesType
                                     &  movingImageGradientValue,
                                     double cubicBSplineDerivativeValue) const;

  void GetValueThreadPreProcess(ThreadIdType threadID, bool withinSampleThread) const;

  bool GetValueThreadProcessSample(ThreadIdType threadID, SizeValueType fixedImageSample,
                                                  const MovingImagePointType & mappedPoint,
                                                  double movingImageValue) const;

  void GetValueThreadPostProcess(ThreadIdType threadID, bool withinSampleThread) const;

  void GetValueAndDerivativeThreadPreProcess( ThreadIdType threadID, bool withinSampleThread) const;

  bool GetValueAndDerivativeThreadProcessSample(ThreadIdType threadID, SizeValueType fixedImageSample,
                                                               const MovingImagePointType & mappedPoint,
                                                               double movingImageValue, const ImageDerivativesType & movingImageGradientValue) const;

  void GetValueAndDerivativeThreadPostProcess( ThreadIdType threadID, bool withinSampleThread) const;

  SizeValueType m_NumberOfHistogramBins;
  double        m_MovingImageNormalizedMin;
  double        m_FixedImageNormalizedMin;
  double        m_FixedImageTrueMin;
  double        m_FixedImageTrueMax;
  double        m_MovingImageTrueMin;
  double        m_MovingImageTrueMax;
  double        m_FixedImageBinSize;
  double        m_MovingImageBinSize;

  typename CubicBSplineFunctionType::Pointer           m_CubicBSplineKernel;
  typename CubicBSplineDerivativeFunctionType::Pointer m_CubicBSplineDerivativeKernel;

  typedef double              PRatioType;
  typedef Array2D<PRatioType> PRatioArrayType;

  mutable PRatioArrayType m_PRatioArray;

  mutable std::vector<DerivativeType> m_ThreaderMetricDerivative;

  mutable std::vector<PDFValueType>               m_MovingImageMarginalPDF;
  mutable std::vector<std::vector<PDFValueType> > m_ThreaderFixedImageMarginalPDF;

  typename std::vector<JointPDFType::Pointer>            m_ThreaderJointPDF;
  typename std::vector<JointPDFDerivativesType::Pointer> m_ThreaderJointPDFDerivatives;

  std::vector<int> m_ThreaderJointPDFStartBin;
  std::vector<int> m_ThreaderJointPDFEndBin;

  mutable std::vector<double> m_ThreaderJointPDFSum;

  bool         m_UseExplicitPDFDerivatives;
  mutable bool m_ImplicitDerivativesSecondPass;
};
} // end namespace itk

#ifndef ITK_MANUAL_INSTANTIATION
#include "itkMattesMutualInformationImageToImageMetric.hxx"
#endif

#endif