ITK  4.1.0
Insight Segmentation and Registration Toolkit
itkBioGeneNetwork.h
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00001 /*=========================================================================
00002  *
00003  *  Copyright Insight Software Consortium
00004  *
00005  *  Licensed under the Apache License, Version 2.0 (the "License");
00006  *  you may not use this file except in compliance with the License.
00007  *  You may obtain a copy of the License at
00008  *
00009  *         http://www.apache.org/licenses/LICENSE-2.0.txt
00010  *
00011  *  Unless required by applicable law or agreed to in writing, software
00012  *  distributed under the License is distributed on an "AS IS" BASIS,
00013  *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
00014  *  See the License for the specific language governing permissions and
00015  *  limitations under the License.
00016  *
00017  *=========================================================================*/
00018 #ifndef __itkBioGeneNetwork_h
00019 #define __itkBioGeneNetwork_h
00020 
00021 
00022 #include "itkMacro.h"
00023 
00024 #include <vector>
00025 
00026 namespace itk
00027 {
00028 namespace bio
00029 {
00038 class ITK_EXPORT GeneNetwork
00039 {
00040 public:
00041   typedef   std::vector< float > ProteomeType;
00042   typedef   std::vector< float > DomainsType;
00043 public:
00044   GeneNetwork();
00045   virtual ~GeneNetwork();
00046 
00047   void Copy(const GeneNetwork & genome);
00048 
00049 private:
00050 
00051   // This array contains the concentrations of each protein
00052   // in the cell at a certain time.
00053   ProteomeType m_ProteinConcentration;
00054 
00055   // This array contains the concentrations of domain affinities
00056   // in the cell at a certain time. Since each protein may
00057   // have multiple domains and each domain has affinities
00058   // for standard domains in the regulatory section of genes,
00059   // this array is indexed by the domains in the regulatory
00060   // section. The final value on each entry indicates the
00061   // probability of a domain to be bound during a certain time
00062   // interval.
00063   DomainsType m_DomainConcentration;
00064 };
00065 } // end namespace bio
00066 } // end namespace itk
00067 
00068 #endif
00069