ITK
4.1.0
Insight Segmentation and Registration Toolkit
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00001 /*========================================================================= 00002 * 00003 * Copyright Insight Software Consortium 00004 * 00005 * Licensed under the Apache License, Version 2.0 (the "License"); 00006 * you may not use this file except in compliance with the License. 00007 * You may obtain a copy of the License at 00008 * 00009 * http://www.apache.org/licenses/LICENSE-2.0.txt 00010 * 00011 * Unless required by applicable law or agreed to in writing, software 00012 * distributed under the License is distributed on an "AS IS" BASIS, 00013 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 00014 * See the License for the specific language governing permissions and 00015 * limitations under the License. 00016 * 00017 *=========================================================================*/ 00018 #ifndef __itkBioGene_h 00019 #define __itkBioGene_h 00020 00021 00022 #include <string> 00023 #include <vector> 00024 #include <map> 00025 #include "itkMacro.h" 00026 00027 namespace itk 00028 { 00029 namespace bio 00030 { 00042 class ITK_EXPORT Gene 00043 { 00044 public: 00045 typedef std::string NameType; 00046 typedef std::string DomainType; 00047 typedef double AffinityType; 00048 typedef std::map< DomainType, AffinityType > ProteinDomainsType; 00049 00050 typedef struct { 00051 DomainType m_Domain; 00052 bool m_Type; 00053 } ControlDomainType; 00054 00055 typedef std::vector< ControlDomainType > GeneControlDomainsType; 00056 public: 00057 Gene(); 00058 virtual ~Gene(); 00059 00060 void Copy(const Gene & genome); 00061 00063 void SetName(const NameType & name); 00064 00065 void SetName(const char *name); 00066 00067 const char * GetName() const; 00068 00074 void AddProteinDomain(const DomainType & domain, AffinityType affinity); 00075 00079 void AddGeneControlDomain(const DomainType & domain, bool type); 00080 00081 private: 00082 NameType m_Name; 00083 GeneControlDomainsType m_ControlDomains; 00084 ProteinDomainsType m_ProteinDomains; 00085 }; 00086 } // end namespace bio 00087 } // end namespace itk 00088 00089 #endif 00090