itkFreeSurferAsciiMeshIO.h

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/*=========================================================================
 *
 *  Copyright Insight Software Consortium
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/

#ifndef __itkFreeSurferAsciiMeshIO_h
#define __itkFreeSurferAsciiMeshIO_h

#include "itkMeshIOBase.h"

#include <fstream>

namespace itk
{
class ITK_EXPORT FreeSurferAsciiMeshIO:public MeshIOBase
{
public:
  typedef FreeSurferAsciiMeshIO      Self;
  typedef MeshIOBase                 Superclass;
  typedef SmartPointer< const Self > ConstPointer;
  typedef SmartPointer< Self >       Pointer;

  typedef Superclass::SizeValueType    SizeValueType;

  itkNewMacro(Self);

  itkTypeMacro(FreeSurferAsciiMeshIO, MeshIOBase);

  /*-------- This part of the interfaces deals with reading data. ----- */

  virtual bool CanReadFile(const char *FileNameToRead);

  virtual void ReadMeshInformation();

  virtual void ReadPoints(void *buffer);

  virtual void ReadCells(void *buffer);

  virtual void ReadPointData(void *buffer);

  virtual void ReadCellData(void *buffer);

  /*-------- This part of the interfaces deals with writing data. ----- */

  virtual bool CanWriteFile(const char *FileNameToWrite);

  virtual void WriteMeshInformation();

  virtual void WritePoints(void *buffer);

  virtual void WriteCells(void *buffer);

  virtual void WritePointData(void *buffer);

  virtual void WriteCellData(void *buffer);

  virtual void Write();

protected:
  template< typename T >
  void WritePoints(T *buffer, std::ofstream & outputFile, T label = itk::NumericTraits< T >::Zero)
  {
    outputFile.precision(6);
    SizeValueType index = 0;
    for ( SizeValueType ii = 0; ii < this->m_NumberOfPoints; ii++ )
      {
      for ( unsigned int jj = 0; jj < this->m_PointDimension; jj++ )
        {
        outputFile << std::fixed << buffer[index++] << "  ";
        }
      outputFile << label << '\n';
      }
  }

  template< typename T >
  void WriteCells(T *buffer, std::ofstream & outputFile, T label = itk::NumericTraits< T >::Zero)
  {
    const unsigned int numberOfCellPoints = 3;
    SizeValueType      index = 0;

    T *data = new T[this->m_NumberOfCells * numberOfCellPoints];

    ReadCellsBuffer(buffer, data);

    for ( SizeValueType ii = 0; ii < this->m_NumberOfCells; ii++ )
      {
      for ( unsigned int jj = 0; jj < numberOfCellPoints; jj++ )
        {
        outputFile << data[index++] << "  ";
        }
      outputFile << label << '\n';
      }
    delete[] data;
  }

  template< typename TInput, typename TOutput >
  void ReadCellsBuffer(TInput *input, TOutput *output)
    {
    if ( input && output )
      {
      for ( SizeValueType ii = 0; ii < this->m_NumberOfCells; ii++ )
        {
        for ( unsigned int jj = 0; jj < 3; jj++ )
          {

          output[ii * 3 + jj] = static_cast< TOutput >( input[5 * ii + jj + 2] );
          }
        }
      }
    }

protected:
  FreeSurferAsciiMeshIO();
  virtual ~FreeSurferAsciiMeshIO(){}

  void PrintSelf(std::ostream & os, Indent indent) const;

  void OpenFile();

  void CloseFile();

private:
  FreeSurferAsciiMeshIO(const Self &); // purposely not implemented
  void operator=(const Self &); // purposely not implemented

  std::ifstream m_InputFile;
};
} // end namespace itk

#endif