ITK
4.1.0
Insight Segmentation and Registration Toolkit
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00001 /*========================================================================= 00002 * 00003 * Copyright Insight Software Consortium 00004 * 00005 * Licensed under the Apache License, Version 2.0 (the "License"); 00006 * you may not use this file except in compliance with the License. 00007 * You may obtain a copy of the License at 00008 * 00009 * http://www.apache.org/licenses/LICENSE-2.0.txt 00010 * 00011 * Unless required by applicable law or agreed to in writing, software 00012 * distributed under the License is distributed on an "AS IS" BASIS, 00013 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 00014 * See the License for the specific language governing permissions and 00015 * limitations under the License. 00016 * 00017 *=========================================================================*/ 00018 #ifndef __itkVectorConfidenceConnectedImageFilter_h 00019 #define __itkVectorConfidenceConnectedImageFilter_h 00020 00021 #include "itkImageToImageFilter.h" 00022 #include "itkMahalanobisDistanceThresholdImageFunction.h" 00023 00024 namespace itk 00025 { 00058 template< class TInputImage, class TOutputImage > 00059 class ITK_EXPORT VectorConfidenceConnectedImageFilter: 00060 public ImageToImageFilter< TInputImage, TOutputImage > 00061 { 00062 public: 00064 typedef VectorConfidenceConnectedImageFilter Self; 00065 typedef ImageToImageFilter< TInputImage, TOutputImage > Superclass; 00066 typedef SmartPointer< Self > Pointer; 00067 typedef SmartPointer< const Self > ConstPointer; 00068 00070 itkNewMacro(Self); 00071 00073 itkTypeMacro(VectorConfidenceConnectedImageFilter, 00074 ImageToImageFilter); 00075 00076 typedef TInputImage InputImageType; 00077 typedef typename InputImageType::Pointer InputImagePointer; 00078 typedef typename InputImageType::RegionType InputImageRegionType; 00079 typedef typename InputImageType::PixelType InputImagePixelType; 00080 typedef typename InputImageType::IndexType IndexType; 00081 typedef typename InputImageType::SizeType SizeType; 00082 00083 typedef TOutputImage OutputImageType; 00084 typedef typename OutputImageType::Pointer OutputImagePointer; 00085 typedef typename OutputImageType::RegionType OutputImageRegionType; 00086 typedef typename OutputImageType::PixelType OutputImagePixelType; 00087 00088 typedef std::vector< IndexType > SeedsContainerType; 00089 00090 typedef MahalanobisDistanceThresholdImageFunction< 00091 InputImageType > 00092 DistanceThresholdFunctionType; 00093 00094 typedef typename DistanceThresholdFunctionType::CovarianceMatrixType CovarianceMatrixType; 00095 typedef typename DistanceThresholdFunctionType::MeanVectorType MeanVectorType; 00096 00097 typedef typename DistanceThresholdFunctionType::Pointer DistanceThresholdFunctionPointer; 00098 00099 void PrintSelf(std::ostream & os, Indent indent) const; 00100 00102 void SetSeed(const IndexType & seed) 00103 { 00104 m_Seeds.clear(); 00105 this->AddSeed(seed); 00106 } 00108 00110 void AddSeed(const IndexType & seed) 00111 { 00112 m_Seeds.push_back(seed); 00113 this->Modified(); 00114 } 00116 00119 itkSetMacro(Multiplier, double); 00120 itkGetConstMacro(Multiplier, double); 00122 00124 itkSetMacro(NumberOfIterations, unsigned int); 00125 itkGetConstMacro(NumberOfIterations, unsigned int); 00127 00129 itkSetMacro(ReplaceValue, OutputImagePixelType); 00130 itkGetConstMacro(ReplaceValue, OutputImagePixelType); 00132 00135 itkSetMacro(InitialNeighborhoodRadius, unsigned int); 00136 itkGetConstReferenceMacro(InitialNeighborhoodRadius, unsigned int); 00138 00140 const MeanVectorType & GetMean() const; 00141 00143 const CovarianceMatrixType & GetCovariance() const; 00144 00146 virtual const SeedsContainerType &GetSeeds() const; 00147 00148 00149 #ifdef ITK_USE_CONCEPT_CHECKING 00150 00151 itkConceptMacro( OutputEqualityComparableCheck, 00152 ( Concept::EqualityComparable< OutputImagePixelType > ) ); 00153 itkConceptMacro( InputHasNumericTraitsCheck, 00154 ( Concept::HasNumericTraits< typename InputImagePixelType::ValueType > ) ); 00155 itkConceptMacro( OutputOStreamWritableCheck, 00156 ( Concept::OStreamWritable< OutputImagePixelType > ) ); 00157 00159 #endif 00160 protected: 00161 VectorConfidenceConnectedImageFilter(); 00162 00163 // Override since the filter needs all the data for the algorithm 00164 void GenerateInputRequestedRegion(); 00165 00166 // Override since the filter produces the entire dataset 00167 void EnlargeOutputRequestedRegion(DataObject *output); 00168 00169 void GenerateData(); 00170 00171 private: 00172 VectorConfidenceConnectedImageFilter(const Self &); //purposely not 00173 // implemented 00174 void operator=(const Self &); //purposely not 00175 00176 // implemented 00177 00178 SeedsContainerType m_Seeds; 00179 double m_Multiplier; 00180 unsigned int m_NumberOfIterations; 00181 OutputImagePixelType m_ReplaceValue; 00182 unsigned int m_InitialNeighborhoodRadius; 00183 00184 DistanceThresholdFunctionPointer m_ThresholdFunction; 00185 }; 00186 } // end namespace itk 00187 00188 #ifndef ITK_MANUAL_INSTANTIATION 00189 #include "itkVectorConfidenceConnectedImageFilter.hxx" 00190 #endif 00191 00192 #endif 00193