ITK  4.2.0
Insight Segmentation and Registration Toolkit
itkBioGene.h
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1 /*=========================================================================
2  *
3  * Copyright Insight Software Consortium
4  *
5  * Licensed under the Apache License, Version 2.0 (the "License");
6  * you may not use this file except in compliance with the License.
7  * You may obtain a copy of the License at
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9  * http://www.apache.org/licenses/LICENSE-2.0.txt
10  *
11  * Unless required by applicable law or agreed to in writing, software
12  * distributed under the License is distributed on an "AS IS" BASIS,
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14  * See the License for the specific language governing permissions and
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16  *
17  *=========================================================================*/
18 #ifndef __itkBioGene_h
19 #define __itkBioGene_h
20 
21 
22 #include <string>
23 #include <vector>
24 #include <map>
25 #include "itkMacro.h"
26 
27 namespace itk
28 {
29 namespace bio
30 {
42 class ITK_EXPORT Gene
43 {
44 public:
45  typedef std::string NameType;
46  typedef std::string DomainType;
47  typedef double AffinityType;
48  typedef std::map< DomainType, AffinityType > ProteinDomainsType;
49 
50  typedef struct {
52  bool m_Type;
54 
55  typedef std::vector< ControlDomainType > GeneControlDomainsType;
56 public:
57  Gene();
58  virtual ~Gene();
59 
60  void Copy(const Gene & genome);
61 
63  void SetName(const NameType & name);
64 
65  void SetName(const char *name);
66 
67  const char * GetName() const;
68 
74  void AddProteinDomain(const DomainType & domain, AffinityType affinity);
75 
79  void AddGeneControlDomain(const DomainType & domain, bool type);
80 
81 private:
85 };
86 } // end namespace bio
87 } // end namespace itk
88 
89 #endif
90