itkBioGene.h

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/*=========================================================================
 *
 *  Copyright Insight Software Consortium
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef __itkBioGene_h
#define __itkBioGene_h


#include <string>
#include <vector>
#include <map>
#include "itkMacro.h"

namespace itk
{
namespace bio
{
class ITK_EXPORT Gene
{
public:
  typedef   std::string                          NameType;
  typedef   std::string                          DomainType;
  typedef   double                               AffinityType;
  typedef   std::map< DomainType, AffinityType > ProteinDomainsType;

  typedef   struct {
    DomainType m_Domain;
    bool m_Type;
  }                                             ControlDomainType;

  typedef   std::vector< ControlDomainType > GeneControlDomainsType;
public:
  Gene();
  virtual ~Gene();

  void Copy(const Gene & genome);

  void SetName(const NameType & name);

  void SetName(const char *name);

  const char * GetName() const;

  void AddProteinDomain(const DomainType & domain, AffinityType affinity);

  void AddGeneControlDomain(const DomainType & domain, bool type);

private:
  NameType               m_Name;
  GeneControlDomainsType m_ControlDomains;
  ProteinDomainsType     m_ProteinDomains;
};
} // end namespace bio
} // end namespace itk

#endif