ITK  4.2.0
Insight Segmentation and Registration Toolkit
itkDeformableSimplexMesh3DFilter.h
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5  * Licensed under the Apache License, Version 2.0 (the "License");
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18 /*=========================================================================
19  *
20  * Portions of this file are subject to the VTK Toolkit Version 3 copyright.
21  *
22  * Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen
23  *
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25  * please refer to the NOTICE file at the top of the ITK source tree.
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28 #ifndef __itkDeformableSimplexMesh3DFilter_h
29 #define __itkDeformableSimplexMesh3DFilter_h
30 
31 #include "itkMeshToMeshFilter.h"
32 #include "itkSimplexMesh.h"
37 #include "itkArray.h"
38 
39 #include <set>
40 
41 namespace itk
42 {
75 template< class TInputMesh, class TOutputMesh >
76 class ITK_EXPORT DeformableSimplexMesh3DFilter:public MeshToMeshFilter< TInputMesh, TOutputMesh >
77 {
78 public:
81 
84 
88 
90  itkNewMacro(Self);
91 
94 
96  typedef TInputMesh InputMeshType;
97  typedef TOutputMesh OutputMeshType;
98 
99  typedef typename InputMeshType::PointsContainerPointer InputPointsContainerPointer;
100  typedef typename InputMeshType::PointsContainer InputPointsContainer;
101  typedef typename InputMeshType::PointsContainer::ConstIterator InputPointsContainerConstIterator;
102 
107  typedef typename InputMeshType::PixelType PixelType;
108 
114 
120 
121  /* Mesh pointer definition. */
122  typedef typename InputMeshType::Pointer InputMeshPointer;
123  typedef typename OutputMeshType::Pointer OutputMeshPointer;
124 
125  typedef typename InputMeshType::PointType MeshPointType;
126  typedef typename InputMeshType::CellsContainerPointer CellsContainerPointer;
127  typedef typename InputMeshType::CellsContainer::Iterator CellsContainerIterator;
128  typedef typename InputMeshType::NeighborListType InputNeighbors;
129  typedef typename InputMeshType::NeighborListType::iterator InputNeighborsIterator;
130 
131  typedef std::set< IdentifierType > NeighborSetType;
132  typedef std::set< IdentifierType > IndexSetType;
134  typedef typename NeighborSetType::iterator NeighborSetIterator;
135  typedef typename IndexSetType::iterator IndexSetIterator;
136 
137  typedef typename InputMeshType::GeometryMapType GeometryMapType;
138  typedef typename GeometryMapType::Pointer GeometryMapPointer;
139  typedef typename GeometryMapType::Iterator GeometryMapIterator;
140 
148  void SetGradient( const GradientImageType * gradientImage );
149 
153  const GradientImageType * GetGradient() const;
154 
158  itkSetMacro(Iterations, int);
159  itkGetConstMacro(Iterations, int);
161 
163  itkSetMacro(Alpha, double);
164 
166  itkGetConstMacro(Alpha, double);
167 
169  itkSetMacro(Beta, double);
170 
172  itkGetConstMacro(Beta, double);
173 
175  itkSetMacro(Gamma, double);
176 
178  itkGetConstMacro(Gamma, double);
179 
181  itkSetMacro(Damping, double);
182 
184  itkGetConstMacro(Damping, double);
185 
187  itkSetMacro(Rigidity, unsigned int);
188 
190  itkGetConstMacro(Rigidity, unsigned int);
191 
192  itkSetObjectMacro(Data, GeometryMapType);
193  itkGetConstObjectMacro(Data, GeometryMapType);
194 
196  itkGetConstMacro(ImageWidth, int);
197  itkGetConstMacro(ImageHeight, int);
198  itkGetConstMacro(ImageDepth, int);
200 
202  itkGetConstMacro(Step, int);
203 protected:
206  DeformableSimplexMesh3DFilter(const Self &); //purposely not implemented
207  void operator=(const Self &); //purposely not implemented
209 
210  void PrintSelf(std::ostream & os, Indent indent) const;
211 
213  virtual void GenerateData();
214 
220  virtual void Initialize();
221 
227  virtual void ComputeGeometry();
228 
234  virtual void ComputeDisplacement();
235 
239  virtual void ComputeInternalForce(SimplexMeshGeometry *data);
240 
244  virtual void ComputeExternalForce(SimplexMeshGeometry *data);
245 
250  virtual void ComputeOutput();
251 
255  virtual void UpdateReferenceMetrics();
256 
260  double L_Func(double r, double d, double phi);
261 
265  PointType ComputeBarycentricCoordinates(PointType p, SimplexMeshGeometry *data);
266 
274  double m_Alpha;
275 
282  double m_Beta;
283 
290  double m_Gamma;
291  double m_Damping;
292 
299  unsigned int m_Rigidity;
300 
301  // definition of internal parameters
303  int m_Step;
304 
307 
310 
313 
316 
321 
322 }; // end of class
323 } // end namespace itk
324 
325 #ifndef ITK_MANUAL_INSTANTIATION
326 #include "itkDeformableSimplexMesh3DFilter.hxx"
327 #endif
328 
329 #endif //__itkDeformableSimplexMesh3DFilter_h
330