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Modules
Segmentation
BioCell
include
itkBioGeneNetwork.h
Go to the documentation of this file.
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/*=========================================================================
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*
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* Copyright Insight Software Consortium
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*
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* Licensed under the Apache License, Version 2.0 (the "License");
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* you may not use this file except in compliance with the License.
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* You may obtain a copy of the License at
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*
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* http://www.apache.org/licenses/LICENSE-2.0.txt
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*
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* Unless required by applicable law or agreed to in writing, software
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* distributed under the License is distributed on an "AS IS" BASIS,
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* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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* See the License for the specific language governing permissions and
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* limitations under the License.
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*
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*=========================================================================*/
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#ifndef __itkBioGeneNetwork_h
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#define __itkBioGeneNetwork_h
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#include "
itkMacro.h
"
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#include <vector>
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namespace
itk
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{
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namespace
bio
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{
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class
ITK_EXPORT
GeneNetwork
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{
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public
:
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typedef
std::vector< float >
ProteomeType
;
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typedef
std::vector< float >
DomainsType
;
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public
:
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GeneNetwork
();
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virtual
~
GeneNetwork
();
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void
Copy(
const
GeneNetwork
& genome);
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private
:
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// This array contains the concentrations of each protein
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// in the cell at a certain time.
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ProteomeType
m_ProteinConcentration
;
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// This array contains the concentrations of domain affinities
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// in the cell at a certain time. Since each protein may
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// have multiple domains and each domain has affinities
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// for standard domains in the regulatory section of genes,
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// this array is indexed by the domains in the regulatory
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// section. The final value on each entry indicates the
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// probability of a domain to be bound during a certain time
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// interval.
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DomainsType
m_DomainConcentration
;
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};
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}
// end namespace bio
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}
// end namespace itk
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#endif
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