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Modules
Segmentation
BioCell
include
itkBioGenome.h
Go to the documentation of this file.
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/*=========================================================================
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*
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* Copyright Insight Software Consortium
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*
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* Licensed under the Apache License, Version 2.0 (the "License");
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* you may not use this file except in compliance with the License.
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* You may obtain a copy of the License at
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*
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* http://www.apache.org/licenses/LICENSE-2.0.txt
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*
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* Unless required by applicable law or agreed to in writing, software
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* distributed under the License is distributed on an "AS IS" BASIS,
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* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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* See the License for the specific language governing permissions and
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* limitations under the License.
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*
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*=========================================================================*/
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#ifndef __itkBioGenome_h
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#define __itkBioGenome_h
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#if defined( _WIN32 )
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#include "
itkWindows.h
"
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#endif
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#include "
itkMacro.h
"
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#include <map>
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#include <string>
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#include "vcl_cmath.h"
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namespace
itk
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{
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namespace
bio
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{
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class
ITK_EXPORT
Genome
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{
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public
:
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typedef
std::string
GeneIdType
;
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typedef
std::map< GeneIdType, double >
MapType
;
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public
:
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Genome
();
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virtual
~
Genome
();
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void
Copy(
const
Genome
& genome);
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void
InsertGene(
const
GeneIdType
& geneId);
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void
KnockOutGene(
const
GeneIdType
& geneId);
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double
GetExpressionLevel(
const
GeneIdType
& geneId);
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void
SetExpressionLevel(
const
GeneIdType
& geneId,
double
level);
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static
double
Sigmoide(
double
threshold,
double
slant,
double
value)
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{
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return
vcl_atan( ( value - threshold ) / slant ) / 3.1416 + 0.5001;
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}
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private
:
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MapType
m_Map
;
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};
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}
// end namespace bio
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}
// end namespace itk
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#endif
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