itkANTSNeighborhoodCorrelationImageToImageMetricv4GetValueAndDerivativeThreader.h

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 *
 *  Copyright Insight Software Consortium
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
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#ifndef __itkANTSNeighborhoodCorrelationImageToImageMetricv4GetValueAndDerivativeThreader_h
#define __itkANTSNeighborhoodCorrelationImageToImageMetricv4GetValueAndDerivativeThreader_h

#include "itkImageToImageMetricv4GetValueAndDerivativeThreader.h"
#include "itkThreadedImageRegionPartitioner.h"
#include "itkThreadedIndexedContainerPartitioner.h"
#include "itkConstNeighborhoodIterator.h"

#include <deque>

namespace itk
{

template<class T>
struct IdentityHelper
{
  typedef T MyType;
};

template< class TDomainPartitioner, class TImageToImageMetric, class TNeighborhoodCorrelationMetric >
class ANTSNeighborhoodCorrelationImageToImageMetricv4GetValueAndDerivativeThreader
  : public ImageToImageMetricv4GetValueAndDerivativeThreader< TDomainPartitioner, TImageToImageMetric >
{
public:
  typedef ANTSNeighborhoodCorrelationImageToImageMetricv4GetValueAndDerivativeThreader Self;
  typedef ImageToImageMetricv4GetValueAndDerivativeThreader< TDomainPartitioner, TImageToImageMetric >
                                                                                                Superclass;
  typedef SmartPointer< Self >                                                                  Pointer;
  typedef SmartPointer< const Self >                                                            ConstPointer;

  itkTypeMacro( ANTSNeighborhoodCorrelationImageToImageMetricv4GetValueAndDerivativeThreader, ImageToImageMetricv4GetValueAndDerivativeThreader );

  itkNewMacro( Self );

  typedef typename Superclass::DomainType    DomainType;
  typedef typename Superclass::AssociateType AssociateType;

  typedef typename Superclass::VirtualImageType        VirtualImageType;
  typedef typename Superclass::VirtualPointType        VirtualPointType;
  typedef typename Superclass::VirtualIndexType        VirtualIndexType;
  typedef typename Superclass::FixedImagePointType     FixedImagePointType;
  typedef typename Superclass::FixedImagePixelType     FixedImagePixelType;
  typedef typename Superclass::FixedImageGradientType  FixedImageGradientType;
  typedef typename Superclass::MovingImagePointType    MovingImagePointType;
  typedef typename Superclass::MovingImagePixelType    MovingImagePixelType;
  typedef typename Superclass::MovingImageGradientType MovingImageGradientType;
  typedef typename Superclass::MeasureType             MeasureType;
  typedef typename Superclass::DerivativeType          DerivativeType;
  typedef typename Superclass::DerivativeValueType     DerivativeValueType;

  typedef TNeighborhoodCorrelationMetric                                 NeighborhoodCorrelationMetricType;

  typedef typename NeighborhoodCorrelationMetricType::ImageRegionType               ImageRegionType;
  typedef typename NeighborhoodCorrelationMetricType::InternalComputationValueType  InternalComputationValueType;
  typedef typename NeighborhoodCorrelationMetricType::ImageDimensionType            ImageDimensionType;
  typedef typename NeighborhoodCorrelationMetricType::JacobianType                  JacobianType;
  typedef typename NeighborhoodCorrelationMetricType::NumberOfParametersType        NumberOfParametersType;
  typedef typename NeighborhoodCorrelationMetricType::FixedImageType                FixedImageType;
  typedef typename NeighborhoodCorrelationMetricType::MovingImageType               MovingImageType;
  typedef typename NeighborhoodCorrelationMetricType::RadiusType                    RadiusType;

  // interested values here updated during scanning
  typedef InternalComputationValueType                 QueueRealType;
  typedef std::deque<QueueRealType>                    SumQueueType;
  typedef ConstNeighborhoodIterator<VirtualImageType>  ScanIteratorType;

  // one ScanMemType for each thread
  typedef struct ScanMemType {
    // queues used in the scanning
    // sum of the fixed value squared
    SumQueueType QsumFixed2;
    // sum of the moving value squared
    SumQueueType QsumMoving2;
    SumQueueType QsumFixed;
    SumQueueType QsumMoving;
    SumQueueType QsumFixedMoving;
    SumQueueType Qcount;

    QueueRealType fixedA;
    QueueRealType movingA;
    QueueRealType sFixedMoving;
    QueueRealType sFixedFixed;
    QueueRealType sMovingMoving;

    FixedImageGradientType  fixedImageGradient;
    MovingImageGradientType movingImageGradient;

    FixedImagePointType     mappedFixedPoint;
    MovingImagePointType    mappedMovingPoint;
    VirtualPointType        virtualPoint;
  } ScanMemType;

  // For dense scan over one image region
  typedef struct ScanParametersType {
    // const values during scanning
    ImageRegionType scanRegion;
    SizeValueType   numberOfFillZero; // for each queue
    SizeValueType   windowLength; // number of voxels in the scanning window
    IndexValueType  scanRegionBeginIndexDim0;

    typename FixedImageType::ConstPointer   fixedImage;
    typename MovingImageType::ConstPointer  movingImage;
    typename VirtualImageType::ConstPointer virtualImage;
    RadiusType radius;

  } ScanParametersType;

protected:
  ANTSNeighborhoodCorrelationImageToImageMetricv4GetValueAndDerivativeThreader() {}

  virtual bool ProcessVirtualPoint( const VirtualIndexType & virtualIndex,
                                    const VirtualPointType & virtualPoint,
                                    const ThreadIdType threadId ) {
    return ProcessVirtualPoint_impl(IdentityHelper<TDomainPartitioner>(), virtualIndex, virtualPoint, threadId );
  }

  /* specific overloading for sparse CC metric */
  bool ProcessVirtualPoint_impl(
                             IdentityHelper<ThreadedIndexedContainerPartitioner> itkNotUsed(self),
                             const VirtualIndexType & virtualIndex,
                             const VirtualPointType & virtualPoint,
                             const ThreadIdType threadId );

  /* for other default case */
  template<class T>
  bool ProcessVirtualPoint_impl(
                             IdentityHelper<T> itkNotUsed(self),
                             const VirtualIndexType & virtualIndex,
                             const VirtualPointType & virtualPoint,
                             const ThreadIdType threadId ) {
    return Superclass::ProcessVirtualPoint(virtualIndex, virtualPoint, threadId);
  }


  virtual bool ProcessPoint(
         const VirtualIndexType &          itkNotUsed(virtualIndex),
         const VirtualPointType &          itkNotUsed(virtualPoint),
         const FixedImagePointType &       itkNotUsed(mappedFixedPoint),
         const FixedImagePixelType &       itkNotUsed(mappedFixedPixelValue),
         const FixedImageGradientType &    itkNotUsed(mappedFixedImageGradient),
         const MovingImagePointType &      itkNotUsed(mappedMovingPoint),
         const MovingImagePixelType &      itkNotUsed(mappedMovingPixelValue),
         const MovingImageGradientType &   itkNotUsed(mappedMovingImageGradient),
         MeasureType &                     itkNotUsed(metricValueReturn),
         DerivativeType &                  itkNotUsed(localDerivativeReturn),
         const ThreadIdType                itkNotUsed(threadID) ) const
     {
        itkExceptionMacro("ProcessPoint should never be reached in ANTS CC metric threader class.");
     }

  virtual void ThreadedExecution( const DomainType& domain,
                                    const ThreadIdType threadId ){
    ThreadedExecution_impl(IdentityHelper<TDomainPartitioner>(), domain, threadId );
  }

  /* specific overloading for dense threader only based CC metric */
  void ThreadedExecution_impl(
                             IdentityHelper<ThreadedImageRegionPartitioner<TImageToImageMetric::VirtualImageDimension> > itkNotUsed(self),
                             const DomainType& domain,
                             const ThreadIdType threadId );

  /* for other default case */
  template<class T>
  void ThreadedExecution_impl(
                             IdentityHelper<T> itkNotUsed(self),
                             const DomainType& domain,
                             const ThreadIdType threadId );

  void InitializeScanning(const ImageRegionType &scanRegion,
    ScanIteratorType &scanIt, ScanMemType &scanMem,
    ScanParametersType &scanParameters ) const;

  void UpdateQueues(const ScanIteratorType &scanIt,
    ScanMemType &scanMem, const ScanParametersType &scanParameters,
    const ThreadIdType threadID) const;

  void UpdateQueuesAtBeginningOfLine(
    const ScanIteratorType &scanIt, ScanMemType &scanMem,
    const ScanParametersType &scanParameters,
    const ThreadIdType threadID) const;

  void UpdateQueuesToNextScanWindow(
    const ScanIteratorType &scanIt, ScanMemType &scanMem,
    const ScanParametersType &scanParameters,
    const ThreadIdType threadID) const;

  bool ComputeInformationFromQueues(
    const ScanIteratorType &scanIt, ScanMemType &scanMem,
    const ScanParametersType &scanParameters,
    const ThreadIdType threadID) const;

  void ComputeMovingTransformDerivative(
    const ScanIteratorType &scanIt, ScanMemType &scanMem,
    const ScanParametersType &scanParameters, DerivativeType &deriv,
    MeasureType &local_cc, const ThreadIdType threadID) const;

private:
  ANTSNeighborhoodCorrelationImageToImageMetricv4GetValueAndDerivativeThreader( const Self & ); // purposely not implemented
  void operator=( const Self & ); // purposely not implemented

  TNeighborhoodCorrelationMetric * m_ANTSAssociate;
};


} // end namespace itk

#ifndef ITK_MANUAL_INSTANTIATION
#include "itkANTSNeighborhoodCorrelationImageToImageMetricv4GetValueAndDerivativeThreader.hxx"
#endif

#endif