itkJointDomainImageToListSampleAdaptor.h

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 *
 *  Copyright Insight Software Consortium
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef __itkJointDomainImageToListSampleAdaptor_h
#define __itkJointDomainImageToListSampleAdaptor_h

#include "itkPoint.h"
#include "itkPixelTraits.h"
#include "itkImageRegionConstIteratorWithIndex.h"
#include "itkImageRegionIterator.h"
#include "itkListSample.h"

namespace itk
{
namespace Statistics
{
template< class TImage >
struct ImageJointDomainTraits {
  typedef ImageJointDomainTraits                     Self;
  typedef PixelTraits< typename TImage::PixelType >  PixelTraitsType;
  typedef typename PixelTraitsType::ValueType        RangeDomainMeasurementType;

  itkStaticConstMacro(ImageDimension, unsigned int, TImage::ImageDimension);
  itkStaticConstMacro(Dimension,
                      unsigned int,
                      TImage::ImageDimension
                      + PixelTraitsType::Dimension);

  typedef float                                                              CoordinateRepType;
  typedef Point< CoordinateRepType, itkGetStaticConstMacro(ImageDimension) > PointType;
  typedef JoinTraits< RangeDomainMeasurementType, CoordinateRepType >        JoinTraitsType;
  typedef typename JoinTraitsType::ValueType                                 MeasurementType;

  typedef FixedArray< MeasurementType, itkGetStaticConstMacro(Dimension) >
  MeasurementVectorType;
};  // end of ImageJointDomainTraits

template< class TImage >
class ITK_EXPORT JointDomainImageToListSampleAdaptor:
  public ListSample< typename ImageJointDomainTraits< TImage >::MeasurementVectorType >
{
public:

  typedef JointDomainImageToListSampleAdaptor Self;

  typedef ListSample<
    typename ImageJointDomainTraits< TImage >::MeasurementVectorType >   Superclass;

  typedef SmartPointer< Self >       Pointer;
  typedef SmartPointer< const Self > ConstPointer;

  typedef ImageJointDomainTraits< TImage > ImageJointDomainTraitsType;

  typedef typename ImageJointDomainTraitsType::MeasurementVectorType      MeasurementVectorType;
  typedef typename ImageJointDomainTraitsType::MeasurementType            MeasurementType;
  typedef typename ImageJointDomainTraitsType::RangeDomainMeasurementType RangeDomainMeasurementType;
  typedef typename ImageJointDomainTraitsType::PointType                  PointType;
  typedef typename ImageJointDomainTraitsType::CoordinateRepType          CoordinateRepType;

  itkTypeMacro(JointDomainImageToListSampleAdaptor, ListSample);

  itkNewMacro(Self);

  itkStaticConstMacro(MeasurementVectorSize, unsigned int,
                      ImageJointDomainTraitsType::Dimension);

  typedef typename Superclass::MeasurementVectorSizeType MeasurementVectorSizeType;

  typedef typename Superclass::AbsoluteFrequencyType      AbsoluteFrequencyType;
  typedef typename Superclass::TotalAbsoluteFrequencyType TotalAbsoluteFrequencyType;
  typedef typename Superclass::InstanceIdentifier         InstanceIdentifier;

  typedef TImage                                ImageType;
  typedef ImageRegionIterator< ImageType >      ImageIteratorType;
  typedef ImageRegionConstIterator< ImageType > ImageConstIteratorType;

  typedef typename ImageType::Pointer                    ImagePointer;
  typedef typename ImageType::ConstPointer               ImageConstPointer;
  typedef typename ImageType::PixelType                  PixelType;
  typedef typename ImageType::PixelContainerConstPointer PixelContainerConstPointer;
  typedef typename ImageType::IndexType                  ImageIndexType;
  typedef typename ImageType::SizeType                   ImageSizeType;
  typedef typename ImageType::RegionType                 ImageRegionType;
  typedef MeasurementVectorType                          ValueType;

  void SetImage(const TImage *image);

  const TImage * GetImage() const;

  InstanceIdentifier Size() const;

  AbsoluteFrequencyType GetFrequency(InstanceIdentifier id) const;

  TotalAbsoluteFrequencyType GetTotalFrequency() const;

  itkStaticConstMacro(RangeDomainDimension, unsigned int,
                      itk::PixelTraits< typename TImage::PixelType >::Dimension);

  typedef FixedArray< RangeDomainMeasurementType,
                      itkGetStaticConstMacro(RangeDomainDimension) >          RangeDomainMeasurementVectorType;

  typedef std::vector< InstanceIdentifier >                                   InstanceIdentifierVectorType;
  typedef FixedArray< float, itkGetStaticConstMacro(MeasurementVectorSize) >  NormalizationFactorsType;

  void SetNormalizationFactors(NormalizationFactorsType & factors);

  const MeasurementVectorType & GetMeasurementVector(InstanceIdentifier id) const;

  itkSetMacro(UsePixelContainer, bool);
  itkGetConstMacro(UsePixelContainer, bool);
  itkBooleanMacro(UsePixelContainer);

  //  void PrintSelf(std::ostream& os, Indent indent) const;

  class ConstIterator
  {
    friend class JointDomainImageToListSampleAdaptor;

public:

    ConstIterator(const JointDomainImageToListSampleAdaptor *adaptor)
    {
      *this = adaptor->Begin();
    }

    ConstIterator(const ConstIterator & iter)
    {
      m_InstanceIdentifier = iter.m_InstanceIdentifier;
      m_Adaptor            = iter.m_Adaptor;
    }

    ConstIterator & operator=(const ConstIterator & iter)
    {
      m_InstanceIdentifier = iter.m_InstanceIdentifier;
      return *this;
    }

    AbsoluteFrequencyType GetFrequency() const
    {
      return 1;
    }

    const MeasurementVectorType & GetMeasurementVector() const
    {
      m_MeasurementVectorCache = m_Adaptor->GetMeasurementVector(m_InstanceIdentifier);
      return this->m_MeasurementVectorCache;
    }

    InstanceIdentifier GetInstanceIdentifier() const
    {
      return m_InstanceIdentifier;
    }

    ConstIterator & operator++()
    {
      ++m_InstanceIdentifier;
      return *this;
    }

    bool operator!=(const ConstIterator & it)
    {
      return ( m_InstanceIdentifier != it.m_InstanceIdentifier );
    }

    bool operator==(const ConstIterator & it)
    {
      return ( m_InstanceIdentifier == it.m_InstanceIdentifier );
    }

protected:
    // This method should only be available to the ListSample class
    ConstIterator(
      const JointDomainImageToListSampleAdaptor *adaptor,
      InstanceIdentifier iid)
    {
      m_Adaptor = adaptor;
      m_InstanceIdentifier = iid;
    }

    // This method is purposely not implemented
    ConstIterator();

private:
    mutable MeasurementVectorType              m_MeasurementVectorCache;
    InstanceIdentifier                         m_InstanceIdentifier;
    const JointDomainImageToListSampleAdaptor *m_Adaptor;
  };

  class Iterator:public ConstIterator
  {
    friend class JointDomainImageToListSampleAdaptor;

public:

    Iterator(Self *adaptor):ConstIterator(adaptor)
    {}

    Iterator(const Iterator & iter):ConstIterator(iter)
    {}

    Iterator & operator=(const Iterator & iter)
    {
      this->ConstIterator::operator=(iter);
      return *this;
    }

protected:
    // To ensure const-correctness these method must not be in the public API.
    // The are purposly not implemented, since they should never be called.
    Iterator();
    Iterator(const Self *adaptor);
    Iterator(const ConstIterator & it);
    ConstIterator & operator=(const ConstIterator & it);

    Iterator(
      const JointDomainImageToListSampleAdaptor *adaptor,
      InstanceIdentifier iid):ConstIterator(adaptor, iid)
    {}

private:
  };

  Iterator Begin()
  {
    Iterator iter(this, 0);

    return iter;
  }

  Iterator End()
  {
    Iterator iter( this, m_Image->GetPixelContainer()->Size() );

    return iter;
  }

  ConstIterator Begin() const
  {
    ConstIterator iter(this, 0);

    return iter;
  }

  ConstIterator End() const
  {
    ConstIterator iter( this, m_Image->GetPixelContainer()->Size() );

    return iter;
  }

protected:
  JointDomainImageToListSampleAdaptor();
  virtual ~JointDomainImageToListSampleAdaptor() {}
  void PrintSelf(std::ostream & os, Indent indent) const;

private:
  JointDomainImageToListSampleAdaptor(const Self &); //purposely not implemented
  void operator=(const Self &);                      //purposely not implemented

  NormalizationFactorsType                 m_NormalizationFactors;
  mutable MeasurementVectorType            m_TempVector;
  mutable PointType                        m_TempPoint;
  mutable ImageIndexType                   m_TempIndex;
  mutable RangeDomainMeasurementVectorType m_TempRangeVector;
  ImageConstPointer                        m_Image;
  bool                                     m_UsePixelContainer;

  PixelContainerConstPointer m_PixelContainer;
};  // end of class JointDomainImageToListSampleAdaptor
} // end of namespace Statistics
} // end of namespace itk

#ifndef ITK_MANUAL_INSTANTIATION
#include "itkJointDomainImageToListSampleAdaptor.hxx"
#endif

#endif