SimpleITK  1.3.0.dev466
DicomSeriesReader/DicomSeriesReader.py
1 #!/usr/bin/env python
2 #=========================================================================
3 #
4 # Copyright Insight Software Consortium
5 #
6 # Licensed under the Apache License, Version 2.0 (the "License");
7 # you may not use this file except in compliance with the License.
8 # You may obtain a copy of the License at
9 #
10 # http://www.apache.org/licenses/LICENSE-2.0.txt
11 #
12 # Unless required by applicable law or agreed to in writing, software
13 # distributed under the License is distributed on an "AS IS" BASIS,
14 # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
15 # See the License for the specific language governing permissions and
16 # limitations under the License.
17 #
18 #=========================================================================
19 
20 from __future__ import print_function
21 
22 import SimpleITK as sitk
23 import sys, os
24 
25 if len ( sys.argv ) < 3:
26  print( "Usage: DicomSeriesReader <input_directory> <output_file>" )
27  sys.exit ( 1 )
28 
29 
30 print( "Reading Dicom directory:", sys.argv[1] )
31 reader = sitk.ImageSeriesReader()
32 
33 dicom_names = reader.GetGDCMSeriesFileNames( sys.argv[1] )
34 reader.SetFileNames(dicom_names)
35 
36 image = reader.Execute()
37 
38 size = image.GetSize()
39 print( "Image size:", size[0], size[1], size[2] )
40 
41 print( "Writing image:", sys.argv[2] )
42 
43 sitk.WriteImage( image, sys.argv[2] )
44 
45 if ( not "SITK_NOSHOW" in os.environ ):
46  sitk.Show( image, "Dicom Series" )