SimpleITK  1.3.0.dev466
ImageRegistrationMethodBSpline1/ImageRegistrationMethodBSpline1.cxx
/*=========================================================================
*
* Copyright Insight Software Consortium
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0.txt
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*
*=========================================================================*/
// This one header will include all SimpleITK filters and external
// objects.
#include <SimpleITK.h>
#include <iostream>
#include <stdlib.h>
#include <iomanip>
namespace sitk = itk::simple;
// use sitk's output operator for std::vector etc..
using sitk::operator<<;
class IterationUpdate
: public sitk::Command
{
public:
IterationUpdate( const sitk::ImageRegistrationMethod &m)
: m_Method(m)
{}
virtual void Execute( )
{
// use sitk's output operator for std::vector etc..
using sitk::operator<<;
if (m_Method.GetOptimizerIteration() == 0)
{
std::cout << m_Method.ToString() << std::endl;
}
// stash the stream state
std::ios state(NULL);
state.copyfmt(std::cout);
std::cout << std::fixed << std::setfill(' ') << std::setprecision( 5 );
std::cout << std::setw(3) << m_Method.GetOptimizerIteration();
std::cout << " = " << std::setw(10) << m_Method.GetMetricValue() << std::endl;
std::cout.copyfmt(state);
}
private:
};
int main(int argc, char *argv[])
{
if ( argc < 4 )
{
std::cerr << "Usage: " << argv[0] << " <fixedImageFilter> <movingImageFile> <outputTransformFile>" << std::endl;
return 1;
}
std::vector<unsigned int> transformDomainMeshSize(fixed.GetDimension(),8);
sitk::BSplineTransform tx = sitk::BSplineTransformInitializer(fixed, transformDomainMeshSize);
std::cout << "Initial Parameters:" << tx.GetParameters() << std::endl;
const double gradientConvergenceTolerance = 1e-5;
const unsigned int maximumNumberOfIterations = 100;
const unsigned int maximumNumberOfCorrections = 5;
const unsigned int maximumNumberOfFunctionEvaluations = 1000;
const double costFunctionConvergenceFactor = 1e+7;
R.SetOptimizerAsLBFGSB(gradientConvergenceTolerance,
maximumNumberOfIterations,
maximumNumberOfCorrections,
maximumNumberOfFunctionEvaluations,
costFunctionConvergenceFactor);
R.SetInitialTransform(tx, true);
IterationUpdate cmd(R);
sitk::Transform outTx = R.Execute( fixed, moving );
std::cout << "-------" << std::endl;
std::cout << outTx.ToString() << std::endl;
std::cout << "Optimizer stop condition: " << R.GetOptimizerStopConditionDescription() << std::endl;
std::cout << " Iteration: " << R.GetOptimizerIteration() << std::endl;
std::cout << " Metric value: " << R.GetMetricValue() << std::endl;
sitk::WriteTransform(outTx, argv[3]);
return 0;
}