SimpleITK  1.3.0.dev216
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itk::simple::BinaryClosingByReconstructionImageFilter Class Reference

binary closing by reconstruction of an image. More...

#include <sitkBinaryClosingByReconstructionImageFilter.h>

+ Inheritance diagram for itk::simple::BinaryClosingByReconstructionImageFilter:
+ Collaboration diagram for itk::simple::BinaryClosingByReconstructionImageFilter:

Public Types

enum  KernelType {
  Annulus =sitkAnnulus,
  Ball =sitkBall,
  Box =sitkBox,
  Cross =sitkCross
}
 
typedef IntegerPixelIDTypeList PixelIDTypeList
 
typedef BinaryClosingByReconstructionImageFilter Self
 
- Public Types inherited from itk::simple::ImageFilter< 1 >
typedef ImageFilter Self
 
- Public Types inherited from itk::simple::ProcessObject
typedef ProcessObject Self
 

Public Member Functions

 BinaryClosingByReconstructionImageFilter ()
 
Image Execute (const Image &image1)
 
Image Execute (const Image &image1, double foregroundValue, bool fullyConnected)
 
SelfFullyConnectedOff ()
 
SelfFullyConnectedOn ()
 
double GetForegroundValue () const
 
bool GetFullyConnected () const
 
std::vector< uint32_tGetKernelRadius () const
 
KernelEnum GetKernelType () const
 
std::string GetName () const
 
SelfSetForegroundValue (double ForegroundValue)
 
SelfSetFullyConnected (bool FullyConnected)
 
SelfSetKernelRadius (uint32_t r)
 
SelfSetKernelRadius (const std::vector< uint32_t > &r)
 
SelfSetKernelType (KernelEnum t)
 
SelfSetKernelType (KernelType t)
 
std::string ToString () const
 
virtual ~BinaryClosingByReconstructionImageFilter ()
 
- Public Member Functions inherited from itk::simple::ImageFilter< 1 >
 ImageFilter ()
 
virtual ~ImageFilter ()=0
 
- Public Member Functions inherited from itk::simple::ProcessObject
virtual void Abort ()
 
virtual int AddCommand (itk::simple::EventEnum event, itk::simple::Command &cmd)
 Add a Command Object to observer the event. More...
 
virtual float GetProgress () const
 An Active Measurement of the progress of execution. More...
 
virtual bool HasCommand (itk::simple::EventEnum event) const
 Query of this object has any registered commands for event. More...
 
 ProcessObject ()
 
virtual void RemoveAllCommands ()
 Remove all registered commands. More...
 
virtual ~ProcessObject ()
 
virtual void DebugOn ()
 
virtual void DebugOff ()
 
virtual bool GetDebug () const
 
virtual void SetDebug (bool debugFlag)
 
virtual void SetNumberOfThreads (unsigned int n)
 
virtual unsigned int GetNumberOfThreads () const
 

Private Types

typedef Image(Self::* MemberFunctionType) (const Image &image1)
 

Private Member Functions

template<class TImageType >
Image ExecuteInternal (const Image &image1)
 

Private Attributes

double m_ForegroundValue
 
bool m_FullyConnected
 
std::vector< uint32_tm_KernelRadius
 
KernelEnum m_KernelType
 
nsstd::auto_ptr< detail::MemberFunctionFactory< MemberFunctionType > > m_MemberFactory
 

Friends

struct detail::MemberFunctionAddressor< MemberFunctionType >
 

Additional Inherited Members

- Static Public Member Functions inherited from itk::simple::ProcessObject
static bool GetGlobalDefaultDebug ()
 
static void GlobalDefaultDebugOff ()
 
static void GlobalDefaultDebugOn ()
 
static void SetGlobalDefaultDebug (bool debugFlag)
 
static void GlobalWarningDisplayOn ()
 
static void GlobalWarningDisplayOff ()
 
static void SetGlobalWarningDisplay (bool flag)
 
static bool GetGlobalWarningDisplay ()
 
static void SetGlobalDefaultNumberOfThreads (unsigned int n)
 
static unsigned int GetGlobalDefaultNumberOfThreads ()
 
static double GetGlobalDefaultCoordinateTolerance ()
 Access the global tolerance to determine congruent spaces. More...
 
static void SetGlobalDefaultCoordinateTolerance (double)
 Access the global tolerance to determine congruent spaces. More...
 
static double GetGlobalDefaultDirectionTolerance ()
 Access the global tolerance to determine congruent spaces. More...
 
static void SetGlobalDefaultDirectionTolerance (double)
 Access the global tolerance to determine congruent spaces. More...
 
- Protected Member Functions inherited from itk::simple::ProcessObject
virtual unsigned long AddITKObserver (const itk::EventObject &, itk::Command *)
 
virtual itk::ProcessObjectGetActiveProcess ()
 
virtual void OnActiveProcessDelete ()
 
virtual void onCommandDelete (const itk::simple::Command *cmd) SITK_NOEXCEPT
 
virtual void PreUpdate (itk::ProcessObject *p)
 
virtual void RemoveITKObserver (EventCommand &e)
 
- Protected Member Functions inherited from itk::simple::NonCopyable
 NonCopyable ()
 
- Static Protected Member Functions inherited from itk::simple::ImageFilter< 1 >
static void FixNonZeroIndex (TImageType *img)
 
- Static Protected Member Functions inherited from itk::simple::ProcessObject
template<class TImageType >
static TImageType::ConstPointer CastImageToITK (const Image &img)
 
template<class TImageType >
static Image CastITKToImage (TImageType *img)
 
template<class TPixelType , unsigned int VImageDimension, unsigned int VLength, template< typename, unsigned int > class TVector>
static Image CastITKToImage (itk::Image< TVector< TPixelType, VLength >, VImageDimension > *img)
 
static const itk::EventObjectGetITKEventObject (EventEnum e)
 
template<typename T >
static std::ostream & ToStringHelper (std::ostream &os, const T &v)
 
static std::ostream & ToStringHelper (std::ostream &os, const char &v)
 
static std::ostream & ToStringHelper (std::ostream &os, const signed char &v)
 
static std::ostream & ToStringHelper (std::ostream &os, const unsigned char &v)
 

Detailed Description

binary closing by reconstruction of an image.

This filter removes small (i.e., smaller than the structuring element) holes in the image. It is defined as: Closing(f) = ReconstructionByErosion(Dilation(f)).

The structuring element is assumed to be composed of binary values (zero or one). Only elements of the structuring element having values > 0 are candidates for affecting the center pixel.

Author
Gaetan Lehmann. Biologie du Developpement et de la Reproduction, INRA de Jouy-en-Josas, France.

This implementation was taken from the Insight Journal paper: https://hdl.handle.net/1926/584 or http://www.insight-journal.org/browse/publication/176

See also
MorphologyImageFilter , ClosingByReconstructionImageFilter , BinaryOpeningByReconstructionImageFilter
itk::simple::BinaryClosingByReconstruction for the procedural interface
itk::BinaryClosingByReconstructionImageFilter for the Doxygen on the original ITK class.

Definition at line 51 of file sitkBinaryClosingByReconstructionImageFilter.h.

Member Typedef Documentation

typedef Image(Self::* itk::simple::BinaryClosingByReconstructionImageFilter::MemberFunctionType) (const Image &image1)
private

Setup for member function dispatching

Definition at line 133 of file sitkBinaryClosingByReconstructionImageFilter.h.

Define the pixels types supported by this filter

Definition at line 63 of file sitkBinaryClosingByReconstructionImageFilter.h.

Member Enumeration Documentation

Kernel type enumeration

Enumerator
Annulus 
Ball 
Box 
Cross 

Definition at line 66 of file sitkBinaryClosingByReconstructionImageFilter.h.

Constructor & Destructor Documentation

virtual itk::simple::BinaryClosingByReconstructionImageFilter::~BinaryClosingByReconstructionImageFilter ( )
virtual

Destructor

itk::simple::BinaryClosingByReconstructionImageFilter::BinaryClosingByReconstructionImageFilter ( )

Default Constructor that takes no arguments and initializes default parameters

Member Function Documentation

Image itk::simple::BinaryClosingByReconstructionImageFilter::Execute ( const Image image1)

Execute the filter on the input image

Image itk::simple::BinaryClosingByReconstructionImageFilter::Execute ( const Image image1,
double  foregroundValue,
bool  fullyConnected 
)

Execute the filter on the input image with the given parameters

template<class TImageType >
Image itk::simple::BinaryClosingByReconstructionImageFilter::ExecuteInternal ( const Image image1)
private
Self& itk::simple::BinaryClosingByReconstructionImageFilter::FullyConnectedOff ( )
inline
Self& itk::simple::BinaryClosingByReconstructionImageFilter::FullyConnectedOn ( )
inline

Set the value of FullyConnected to true or false respectfully.

Definition at line 86 of file sitkBinaryClosingByReconstructionImageFilter.h.

double itk::simple::BinaryClosingByReconstructionImageFilter::GetForegroundValue ( ) const
inline

Get the value in the image considered as "foreground". Defaults to maximum value of InputPixelType.

Definition at line 78 of file sitkBinaryClosingByReconstructionImageFilter.h.

bool itk::simple::BinaryClosingByReconstructionImageFilter::GetFullyConnected ( ) const
inline

Set/Get whether the connected components are defined strictly by face connectivity or by face+edge+vertex connectivity. Default is FullyConnectedOff. For objects that are 1 pixel wide, use FullyConnectedOn.

Definition at line 92 of file sitkBinaryClosingByReconstructionImageFilter.h.

std::vector<uint32_t> itk::simple::BinaryClosingByReconstructionImageFilter::GetKernelRadius ( ) const
KernelEnum itk::simple::BinaryClosingByReconstructionImageFilter::GetKernelType ( ) const
std::string itk::simple::BinaryClosingByReconstructionImageFilter::GetName ( ) const
inlinevirtual

Name of this class

Implements itk::simple::ProcessObject.

Definition at line 115 of file sitkBinaryClosingByReconstructionImageFilter.h.

Self& itk::simple::BinaryClosingByReconstructionImageFilter::SetForegroundValue ( double  ForegroundValue)
inline

Set the value in the image to consider as "foreground". Defaults to maximum value of InputPixelType.

Definition at line 73 of file sitkBinaryClosingByReconstructionImageFilter.h.

Self& itk::simple::BinaryClosingByReconstructionImageFilter::SetFullyConnected ( bool  FullyConnected)
inline

Set/Get whether the connected components are defined strictly by face connectivity or by face+edge+vertex connectivity. Default is FullyConnectedOff. For objects that are 1 pixel wide, use FullyConnectedOn.

Definition at line 83 of file sitkBinaryClosingByReconstructionImageFilter.h.

Self& itk::simple::BinaryClosingByReconstructionImageFilter::SetKernelRadius ( uint32_t  r)

Kernel radius as a scale for isotropic structures

Self& itk::simple::BinaryClosingByReconstructionImageFilter::SetKernelRadius ( const std::vector< uint32_t > &  r)

Set/Get the radius of the kernel structuring element as a vector.

If the dimension of the image is greater then the length of r, then the radius will be padded. If it is less the r will be truncated.

Self& itk::simple::BinaryClosingByReconstructionImageFilter::SetKernelType ( KernelEnum  t)

Set/Get the kernel or structuring elemenent used for the morphology

Self& itk::simple::BinaryClosingByReconstructionImageFilter::SetKernelType ( KernelType  t)
std::string itk::simple::BinaryClosingByReconstructionImageFilter::ToString ( ) const
virtual

Print ourselves out

Reimplemented from itk::simple::ProcessObject.

Friends And Related Function Documentation

Member Data Documentation

double itk::simple::BinaryClosingByReconstructionImageFilter::m_ForegroundValue
private
bool itk::simple::BinaryClosingByReconstructionImageFilter::m_FullyConnected
private
std::vector<uint32_t> itk::simple::BinaryClosingByReconstructionImageFilter::m_KernelRadius
private
KernelEnum itk::simple::BinaryClosingByReconstructionImageFilter::m_KernelType
private

KernelType

Definition at line 150 of file sitkBinaryClosingByReconstructionImageFilter.h.

nsstd::auto_ptr<detail::MemberFunctionFactory<MemberFunctionType> > itk::simple::BinaryClosingByReconstructionImageFilter::m_MemberFactory
private

The documentation for this class was generated from the following file: