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itk::simple::LabelOverlapMeasuresImageFilter Class Reference

Computes overlap measures between the set same set of labels of pixels of two images. Background is assumed to be 0. More...

#include <sitkLabelOverlapMeasuresImageFilter.h>

+ Inheritance diagram for itk::simple::LabelOverlapMeasuresImageFilter:
+ Collaboration diagram for itk::simple::LabelOverlapMeasuresImageFilter:

Public Types

typedef IntegerPixelIDTypeList PixelIDTypeList
 
typedef LabelOverlapMeasuresImageFilter Self
 
- Public Types inherited from itk::simple::ImageFilter< 2 >
typedef ImageFilter Self
 
- Public Types inherited from itk::simple::ProcessObject
typedef ProcessObject Self
 

Public Member Functions

void Execute (const Image &image1, const Image &image2)
 
double GetDiceCoefficient () const
 
double GetDiceCoefficient (int64_t label) const
 
double GetFalseNegativeError () const
 
double GetFalseNegativeError (int64_t label) const
 
double GetFalsePositiveError () const
 
double GetFalsePositiveError (int64_t label) const
 
double GetJaccardCoefficient () const
 
double GetJaccardCoefficient (int64_t label) const
 
double GetMeanOverlap () const
 
double GetMeanOverlap (int64_t label) const
 
std::string GetName () const
 
double GetUnionOverlap () const
 
double GetUnionOverlap (int64_t label) const
 
double GetVolumeSimilarity () const
 
double GetVolumeSimilarity (int64_t label) const
 
 LabelOverlapMeasuresImageFilter ()
 
std::string ToString () const
 
virtual ~LabelOverlapMeasuresImageFilter ()
 
- Public Member Functions inherited from itk::simple::ImageFilter< 2 >
 ImageFilter ()
 
virtual ~ImageFilter ()=0
 
- Public Member Functions inherited from itk::simple::ProcessObject
virtual void Abort ()
 
virtual int AddCommand (itk::simple::EventEnum event, itk::simple::Command &cmd)
 Add a Command Object to observer the event. More...
 
virtual float GetProgress () const
 An Active Measurement of the progress of execution. More...
 
virtual bool HasCommand (itk::simple::EventEnum event) const
 Query of this object has any registered commands for event. More...
 
 ProcessObject ()
 
virtual void RemoveAllCommands ()
 Remove all registered commands. More...
 
virtual ~ProcessObject ()
 
virtual void DebugOn ()
 
virtual void DebugOff ()
 
virtual bool GetDebug () const
 
virtual void SetDebug (bool debugFlag)
 
virtual void SetNumberOfThreads (unsigned int n)
 
virtual unsigned int GetNumberOfThreads () const
 

Private Types

typedef void(Self::* MemberFunctionType) (const Image &image1, const Image &image2)
 

Private Member Functions

template<class TImageType >
void ExecuteInternal (const Image &image1, const Image &image2)
 

Private Attributes

double m_DiceCoefficient
 
double m_FalseNegativeError
 
double m_FalsePositiveError
 
itk::ProcessObjectm_Filter
 
double m_JaccardCoefficient
 
double m_MeanOverlap
 
nsstd::auto_ptr< detail::MemberFunctionFactory< MemberFunctionType > > m_MemberFactory
 
nsstd::function< double(int64_t)> m_pfGetDiceCoefficient
 
nsstd::function< double(int64_t)> m_pfGetFalseNegativeError
 
nsstd::function< double(int64_t)> m_pfGetFalsePositiveError
 
nsstd::function< double(int64_t)> m_pfGetJaccardCoefficient
 
nsstd::function< double(int64_t)> m_pfGetMeanOverlap
 
nsstd::function< double(int64_t)> m_pfGetUnionOverlap
 
nsstd::function< double(int64_t)> m_pfGetVolumeSimilarity
 
double m_UnionOverlap
 
double m_VolumeSimilarity
 

Friends

struct detail::MemberFunctionAddressor< MemberFunctionType >
 

Additional Inherited Members

- Static Public Member Functions inherited from itk::simple::ProcessObject
static bool GetGlobalDefaultDebug ()
 
static void GlobalDefaultDebugOff ()
 
static void GlobalDefaultDebugOn ()
 
static void SetGlobalDefaultDebug (bool debugFlag)
 
static void GlobalWarningDisplayOn ()
 
static void GlobalWarningDisplayOff ()
 
static void SetGlobalWarningDisplay (bool flag)
 
static bool GetGlobalWarningDisplay ()
 
static void SetGlobalDefaultNumberOfThreads (unsigned int n)
 
static unsigned int GetGlobalDefaultNumberOfThreads ()
 
static double GetGlobalDefaultCoordinateTolerance ()
 Access the global tolerance to determine congruent spaces. More...
 
static void SetGlobalDefaultCoordinateTolerance (double)
 Access the global tolerance to determine congruent spaces. More...
 
static double GetGlobalDefaultDirectionTolerance ()
 Access the global tolerance to determine congruent spaces. More...
 
static void SetGlobalDefaultDirectionTolerance (double)
 Access the global tolerance to determine congruent spaces. More...
 
- Protected Member Functions inherited from itk::simple::ProcessObject
virtual unsigned long AddITKObserver (const itk::EventObject &, itk::Command *)
 
virtual itk::ProcessObjectGetActiveProcess ()
 
virtual void OnActiveProcessDelete ()
 
virtual void onCommandDelete (const itk::simple::Command *cmd) SITK_NOEXCEPT
 
virtual void PreUpdate (itk::ProcessObject *p)
 
virtual void RemoveITKObserver (EventCommand &e)
 
- Protected Member Functions inherited from itk::simple::NonCopyable
 NonCopyable ()
 
- Static Protected Member Functions inherited from itk::simple::ImageFilter< 2 >
static void FixNonZeroIndex (TImageType *img)
 
- Static Protected Member Functions inherited from itk::simple::ProcessObject
template<class TImageType >
static TImageType::ConstPointer CastImageToITK (const Image &img)
 
template<class TImageType >
static Image CastITKToImage (TImageType *img)
 
template<class TPixelType , unsigned int VImageDimension, unsigned int VLength, template< typename, unsigned int > class TVector>
static Image CastITKToImage (itk::Image< TVector< TPixelType, VLength >, VImageDimension > *img)
 
static const itk::EventObjectGetITKEventObject (EventEnum e)
 
template<typename T >
static std::ostream & ToStringHelper (std::ostream &os, const T &v)
 
static std::ostream & ToStringHelper (std::ostream &os, const char &v)
 
static std::ostream & ToStringHelper (std::ostream &os, const signed char &v)
 
static std::ostream & ToStringHelper (std::ostream &os, const unsigned char &v)
 

Detailed Description

Computes overlap measures between the set same set of labels of pixels of two images. Background is assumed to be 0.

This code was contributed in the Insight Journal paper: "Introducing Dice, Jaccard, and Other Label Overlap Measures To ITK" by Nicholas J. Tustison, James C. Gee https://hdl.handle.net/10380/3141 http://www.insight-journal.org/browse/publication/707

Author
Nicholas J. Tustison
See also
LabelOverlapMeasuresImageFilter
itk::LabelOverlapMeasuresImageFilter for the Doxygen on the original ITK class.

Definition at line 46 of file sitkLabelOverlapMeasuresImageFilter.h.

Member Typedef Documentation

typedef void(Self::* itk::simple::LabelOverlapMeasuresImageFilter::MemberFunctionType) (const Image &image1, const Image &image2)
private

Setup for member function dispatching

Definition at line 195 of file sitkLabelOverlapMeasuresImageFilter.h.

Define the pixels types supported by this filter

Definition at line 58 of file sitkLabelOverlapMeasuresImageFilter.h.

Definition at line 48 of file sitkLabelOverlapMeasuresImageFilter.h.

Constructor & Destructor Documentation

virtual itk::simple::LabelOverlapMeasuresImageFilter::~LabelOverlapMeasuresImageFilter ( )
virtual

Destructor

itk::simple::LabelOverlapMeasuresImageFilter::LabelOverlapMeasuresImageFilter ( )

Default Constructor that takes no arguments and initializes default parameters

Member Function Documentation

void itk::simple::LabelOverlapMeasuresImageFilter::Execute ( const Image image1,
const Image image2 
)

Execute the filter on the input images

template<class TImageType >
void itk::simple::LabelOverlapMeasuresImageFilter::ExecuteInternal ( const Image image1,
const Image image2 
)
private
double itk::simple::LabelOverlapMeasuresImageFilter::GetDiceCoefficient ( ) const
inline

Get the mean overlap (Dice coefficient) for the specified individual label.

This is a measurement. Its value is updated in the Execute methods, so the value will only be valid after an execution.

Definition at line 169 of file sitkLabelOverlapMeasuresImageFilter.h.

double itk::simple::LabelOverlapMeasuresImageFilter::GetDiceCoefficient ( int64_t  label) const
inline

Get the mean overlap (Dice coefficient) over all labels.

This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.

Definition at line 178 of file sitkLabelOverlapMeasuresImageFilter.h.

double itk::simple::LabelOverlapMeasuresImageFilter::GetFalseNegativeError ( ) const
inline

Get the false negative error for the specified individual label.

This is a measurement. Its value is updated in the Execute methods, so the value will only be valid after an execution.

Definition at line 67 of file sitkLabelOverlapMeasuresImageFilter.h.

double itk::simple::LabelOverlapMeasuresImageFilter::GetFalseNegativeError ( int64_t  label) const
inline

Get the false negative error over all labels.

This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.

Definition at line 76 of file sitkLabelOverlapMeasuresImageFilter.h.

double itk::simple::LabelOverlapMeasuresImageFilter::GetFalsePositiveError ( ) const
inline

Get the false positive error for the specified individual label.

This is a measurement. Its value is updated in the Execute methods, so the value will only be valid after an execution.

Definition at line 84 of file sitkLabelOverlapMeasuresImageFilter.h.

double itk::simple::LabelOverlapMeasuresImageFilter::GetFalsePositiveError ( int64_t  label) const
inline

Get the false positive error over all labels.

This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.

Definition at line 93 of file sitkLabelOverlapMeasuresImageFilter.h.

double itk::simple::LabelOverlapMeasuresImageFilter::GetJaccardCoefficient ( ) const
inline

Get the union overlap (Jaccard coefficient) for the specified individual label.

This is a measurement. Its value is updated in the Execute methods, so the value will only be valid after an execution.

Definition at line 152 of file sitkLabelOverlapMeasuresImageFilter.h.

double itk::simple::LabelOverlapMeasuresImageFilter::GetJaccardCoefficient ( int64_t  label) const
inline

Get the union overlap (Jaccard coefficient) over all labels.

This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.

Definition at line 161 of file sitkLabelOverlapMeasuresImageFilter.h.

double itk::simple::LabelOverlapMeasuresImageFilter::GetMeanOverlap ( ) const
inline

Get the mean overlap (Dice coefficient) for the specified individual label.

This is a measurement. Its value is updated in the Execute methods, so the value will only be valid after an execution.

Definition at line 101 of file sitkLabelOverlapMeasuresImageFilter.h.

double itk::simple::LabelOverlapMeasuresImageFilter::GetMeanOverlap ( int64_t  label) const
inline

Get the mean overlap (Dice coefficient) over all labels.

This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.

Definition at line 110 of file sitkLabelOverlapMeasuresImageFilter.h.

std::string itk::simple::LabelOverlapMeasuresImageFilter::GetName ( ) const
inlinevirtual

Name of this class

Implements itk::simple::ProcessObject.

Definition at line 181 of file sitkLabelOverlapMeasuresImageFilter.h.

double itk::simple::LabelOverlapMeasuresImageFilter::GetUnionOverlap ( ) const
inline

Get the union overlap (Jaccard coefficient) for the specified individual label.

This is a measurement. Its value is updated in the Execute methods, so the value will only be valid after an execution.

Definition at line 118 of file sitkLabelOverlapMeasuresImageFilter.h.

double itk::simple::LabelOverlapMeasuresImageFilter::GetUnionOverlap ( int64_t  label) const
inline

Get the union overlap (Jaccard coefficient) over all labels.

This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.

Definition at line 127 of file sitkLabelOverlapMeasuresImageFilter.h.

double itk::simple::LabelOverlapMeasuresImageFilter::GetVolumeSimilarity ( ) const
inline

Get the volume similarity for the specified individual label.

This is a measurement. Its value is updated in the Execute methods, so the value will only be valid after an execution.

Definition at line 135 of file sitkLabelOverlapMeasuresImageFilter.h.

double itk::simple::LabelOverlapMeasuresImageFilter::GetVolumeSimilarity ( int64_t  label) const
inline

Get the volume similarity over all labels.

This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.

Definition at line 144 of file sitkLabelOverlapMeasuresImageFilter.h.

std::string itk::simple::LabelOverlapMeasuresImageFilter::ToString ( ) const
virtual

Print ourselves out

Reimplemented from itk::simple::ProcessObject.

Friends And Related Function Documentation

Definition at line 199 of file sitkLabelOverlapMeasuresImageFilter.h.

Member Data Documentation

double itk::simple::LabelOverlapMeasuresImageFilter::m_DiceCoefficient
private

Definition at line 229 of file sitkLabelOverlapMeasuresImageFilter.h.

double itk::simple::LabelOverlapMeasuresImageFilter::m_FalseNegativeError
private

Definition at line 205 of file sitkLabelOverlapMeasuresImageFilter.h.

double itk::simple::LabelOverlapMeasuresImageFilter::m_FalsePositiveError
private

Definition at line 209 of file sitkLabelOverlapMeasuresImageFilter.h.

itk::ProcessObject* itk::simple::LabelOverlapMeasuresImageFilter::m_Filter
private

Definition at line 234 of file sitkLabelOverlapMeasuresImageFilter.h.

double itk::simple::LabelOverlapMeasuresImageFilter::m_JaccardCoefficient
private

Definition at line 225 of file sitkLabelOverlapMeasuresImageFilter.h.

double itk::simple::LabelOverlapMeasuresImageFilter::m_MeanOverlap
private

Definition at line 213 of file sitkLabelOverlapMeasuresImageFilter.h.

nsstd::auto_ptr<detail::MemberFunctionFactory<MemberFunctionType> > itk::simple::LabelOverlapMeasuresImageFilter::m_MemberFactory
private

Definition at line 201 of file sitkLabelOverlapMeasuresImageFilter.h.

nsstd::function<double(int64_t)> itk::simple::LabelOverlapMeasuresImageFilter::m_pfGetDiceCoefficient
private

Definition at line 231 of file sitkLabelOverlapMeasuresImageFilter.h.

nsstd::function<double(int64_t)> itk::simple::LabelOverlapMeasuresImageFilter::m_pfGetFalseNegativeError
private

Definition at line 207 of file sitkLabelOverlapMeasuresImageFilter.h.

nsstd::function<double(int64_t)> itk::simple::LabelOverlapMeasuresImageFilter::m_pfGetFalsePositiveError
private

Definition at line 211 of file sitkLabelOverlapMeasuresImageFilter.h.

nsstd::function<double(int64_t)> itk::simple::LabelOverlapMeasuresImageFilter::m_pfGetJaccardCoefficient
private

Definition at line 227 of file sitkLabelOverlapMeasuresImageFilter.h.

nsstd::function<double(int64_t)> itk::simple::LabelOverlapMeasuresImageFilter::m_pfGetMeanOverlap
private

Definition at line 215 of file sitkLabelOverlapMeasuresImageFilter.h.

nsstd::function<double(int64_t)> itk::simple::LabelOverlapMeasuresImageFilter::m_pfGetUnionOverlap
private

Definition at line 219 of file sitkLabelOverlapMeasuresImageFilter.h.

nsstd::function<double(int64_t)> itk::simple::LabelOverlapMeasuresImageFilter::m_pfGetVolumeSimilarity
private

Definition at line 223 of file sitkLabelOverlapMeasuresImageFilter.h.

double itk::simple::LabelOverlapMeasuresImageFilter::m_UnionOverlap
private

Definition at line 217 of file sitkLabelOverlapMeasuresImageFilter.h.

double itk::simple::LabelOverlapMeasuresImageFilter::m_VolumeSimilarity
private

Definition at line 221 of file sitkLabelOverlapMeasuresImageFilter.h.


The documentation for this class was generated from the following file: