SimpleITK  1.3.0.dev466
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itk::simple::RegionalMinimaImageFilter Class Reference

Produce a binary image where foreground is the regional minima of the input image. More...

#include <sitkRegionalMinimaImageFilter.h>

+ Inheritance diagram for itk::simple::RegionalMinimaImageFilter:
+ Collaboration diagram for itk::simple::RegionalMinimaImageFilter:

Public Types

typedef ScalarPixelIDTypeList PixelIDTypeList
 
typedef RegionalMinimaImageFilter Self
 
- Public Types inherited from itk::simple::ImageFilter< 1 >
typedef ImageFilter Self
 
- Public Types inherited from itk::simple::ProcessObject
typedef ProcessObject Self
 

Public Member Functions

Image Execute (const Image &image1)
 
Image Execute (const Image &image1, double backgroundValue, double foregroundValue, bool fullyConnected, bool flatIsMinima)
 
SelfFlatIsMinimaOff ()
 
SelfFlatIsMinimaOn ()
 
SelfFullyConnectedOff ()
 
SelfFullyConnectedOn ()
 
double GetBackgroundValue () const
 
bool GetFlatIsMinima () const
 
double GetForegroundValue () const
 
bool GetFullyConnected () const
 
std::string GetName () const
 
 RegionalMinimaImageFilter ()
 
SelfSetBackgroundValue (double BackgroundValue)
 
SelfSetFlatIsMinima (bool FlatIsMinima)
 
SelfSetForegroundValue (double ForegroundValue)
 
SelfSetFullyConnected (bool FullyConnected)
 
std::string ToString () const
 
virtual ~RegionalMinimaImageFilter ()
 
- Public Member Functions inherited from itk::simple::ImageFilter< 1 >
 ImageFilter ()
 
virtual ~ImageFilter ()=0
 
- Public Member Functions inherited from itk::simple::ProcessObject
virtual void Abort ()
 
virtual int AddCommand (itk::simple::EventEnum event, itk::simple::Command &cmd)
 Add a Command Object to observer the event. More...
 
virtual float GetProgress () const
 An Active Measurement of the progress of execution. More...
 
virtual bool HasCommand (itk::simple::EventEnum event) const
 Query of this object has any registered commands for event. More...
 
 ProcessObject ()
 
virtual void RemoveAllCommands ()
 Remove all registered commands. More...
 
virtual ~ProcessObject ()
 
virtual void DebugOn ()
 
virtual void DebugOff ()
 
virtual bool GetDebug () const
 
virtual void SetDebug (bool debugFlag)
 
virtual void SetNumberOfThreads (unsigned int n)
 
virtual unsigned int GetNumberOfThreads () const
 

Private Types

typedef Image(Self::* MemberFunctionType) (const Image &image1)
 

Private Member Functions

template<class TImageType >
Image ExecuteInternal (const Image &image1)
 

Private Attributes

double m_BackgroundValue
 
bool m_FlatIsMinima
 
double m_ForegroundValue
 
bool m_FullyConnected
 
nsstd::auto_ptr< detail::MemberFunctionFactory< MemberFunctionType > > m_MemberFactory
 

Friends

struct detail::MemberFunctionAddressor< MemberFunctionType >
 

Additional Inherited Members

- Static Public Member Functions inherited from itk::simple::ProcessObject
static bool GetGlobalDefaultDebug ()
 
static void GlobalDefaultDebugOff ()
 
static void GlobalDefaultDebugOn ()
 
static void SetGlobalDefaultDebug (bool debugFlag)
 
static void GlobalWarningDisplayOn ()
 
static void GlobalWarningDisplayOff ()
 
static void SetGlobalWarningDisplay (bool flag)
 
static bool GetGlobalWarningDisplay ()
 
static void SetGlobalDefaultNumberOfThreads (unsigned int n)
 
static unsigned int GetGlobalDefaultNumberOfThreads ()
 
static double GetGlobalDefaultCoordinateTolerance ()
 Access the global tolerance to determine congruent spaces. More...
 
static void SetGlobalDefaultCoordinateTolerance (double)
 Access the global tolerance to determine congruent spaces. More...
 
static double GetGlobalDefaultDirectionTolerance ()
 Access the global tolerance to determine congruent spaces. More...
 
static void SetGlobalDefaultDirectionTolerance (double)
 Access the global tolerance to determine congruent spaces. More...
 
- Protected Member Functions inherited from itk::simple::ProcessObject
virtual unsigned long AddITKObserver (const itk::EventObject &, itk::Command *)
 
virtual itk::ProcessObjectGetActiveProcess ()
 
virtual void OnActiveProcessDelete ()
 
virtual void onCommandDelete (const itk::simple::Command *cmd) SITK_NOEXCEPT
 
virtual void PreUpdate (itk::ProcessObject *p)
 
virtual void RemoveITKObserver (EventCommand &e)
 
- Protected Member Functions inherited from itk::simple::NonCopyable
 NonCopyable ()
 
- Static Protected Member Functions inherited from itk::simple::ImageFilter< 1 >
static void FixNonZeroIndex (TImageType *img)
 
- Static Protected Member Functions inherited from itk::simple::ProcessObject
template<class TImageType >
static TImageType::ConstPointer CastImageToITK (const Image &img)
 
template<class TImageType >
static Image CastITKToImage (TImageType *img)
 
template<class TPixelType , unsigned int VImageDimension, unsigned int VLength, template< typename, unsigned int > class TVector>
static Image CastITKToImage (itk::Image< TVector< TPixelType, VLength >, VImageDimension > *img)
 
static const itk::EventObjectGetITKEventObject (EventEnum e)
 
template<typename T >
static std::ostream & ToStringHelper (std::ostream &os, const T &v)
 
static std::ostream & ToStringHelper (std::ostream &os, const char &v)
 
static std::ostream & ToStringHelper (std::ostream &os, const signed char &v)
 
static std::ostream & ToStringHelper (std::ostream &os, const unsigned char &v)
 

Detailed Description

Produce a binary image where foreground is the regional minima of the input image.

Regional minima are flat zones surrounded by pixels of greater value.

If the input image is constant, the entire image can be considered as a minima or not. The SetFlatIsMinima() method let the user choose which behavior to use.

This class was contribtued to the Insight Journal by

Author
Gaetan Lehmann. Biologie du Developpement et de la Reproduction, INRA de Jouy-en-Josas, France. https://hdl.handle.net/1926/153
See also
RegionalMaximaImageFilter
ValuedRegionalMinimaImageFilter
HConcaveImageFilter
itk::simple::RegionalMinima for the procedural interface
itk::RegionalMinimaImageFilter for the Doxygen on the original ITK class.

Definition at line 52 of file sitkRegionalMinimaImageFilter.h.

Member Typedef Documentation

typedef Image(Self::* itk::simple::RegionalMinimaImageFilter::MemberFunctionType) (const Image &image1)
private

Setup for member function dispatching

Definition at line 133 of file sitkRegionalMinimaImageFilter.h.

Define the pixels types supported by this filter

Definition at line 64 of file sitkRegionalMinimaImageFilter.h.

Definition at line 54 of file sitkRegionalMinimaImageFilter.h.

Constructor & Destructor Documentation

virtual itk::simple::RegionalMinimaImageFilter::~RegionalMinimaImageFilter ( )
virtual

Destructor

itk::simple::RegionalMinimaImageFilter::RegionalMinimaImageFilter ( )

Default Constructor that takes no arguments and initializes default parameters

Member Function Documentation

Image itk::simple::RegionalMinimaImageFilter::Execute ( const Image image1)

Execute the filter on the input image

Image itk::simple::RegionalMinimaImageFilter::Execute ( const Image image1,
double  backgroundValue,
double  foregroundValue,
bool  fullyConnected,
bool  flatIsMinima 
)

Execute the filter on the input image with the given parameters

template<class TImageType >
Image itk::simple::RegionalMinimaImageFilter::ExecuteInternal ( const Image image1)
private
Self& itk::simple::RegionalMinimaImageFilter::FlatIsMinimaOff ( )
inline

Definition at line 109 of file sitkRegionalMinimaImageFilter.h.

Self& itk::simple::RegionalMinimaImageFilter::FlatIsMinimaOn ( )
inline

Set the value of FlatIsMinima to true or false respectfully.

Definition at line 108 of file sitkRegionalMinimaImageFilter.h.

Self& itk::simple::RegionalMinimaImageFilter::FullyConnectedOff ( )
inline

Definition at line 95 of file sitkRegionalMinimaImageFilter.h.

Self& itk::simple::RegionalMinimaImageFilter::FullyConnectedOn ( )
inline

Set the value of FullyConnected to true or false respectfully.

Definition at line 94 of file sitkRegionalMinimaImageFilter.h.

double itk::simple::RegionalMinimaImageFilter::GetBackgroundValue ( ) const
inline

Set/Get the value used as "background" in the output image. Defaults to NumericTraits<PixelType>::NonpositiveMin() .

Definition at line 76 of file sitkRegionalMinimaImageFilter.h.

bool itk::simple::RegionalMinimaImageFilter::GetFlatIsMinima ( ) const
inline

Set/Get wether a flat image must be considered as a minima or not. Defaults to true.

Definition at line 114 of file sitkRegionalMinimaImageFilter.h.

double itk::simple::RegionalMinimaImageFilter::GetForegroundValue ( ) const
inline

Set/Get the value in the output image to consider as "foreground". Defaults to maximum value of PixelType.

Definition at line 86 of file sitkRegionalMinimaImageFilter.h.

bool itk::simple::RegionalMinimaImageFilter::GetFullyConnected ( ) const
inline

Set/Get whether the connected components are defined strictly by face connectivity or by face+edge+vertex connectivity. Default is FullyConnectedOff. For objects that are 1 pixel wide, use FullyConnectedOn.

Definition at line 100 of file sitkRegionalMinimaImageFilter.h.

std::string itk::simple::RegionalMinimaImageFilter::GetName ( ) const
inlinevirtual

Name of this class

Implements itk::simple::ProcessObject.

Definition at line 116 of file sitkRegionalMinimaImageFilter.h.

Self& itk::simple::RegionalMinimaImageFilter::SetBackgroundValue ( double  BackgroundValue)
inline

Set/Get the value used as "background" in the output image. Defaults to NumericTraits<PixelType>::NonpositiveMin() .

Definition at line 71 of file sitkRegionalMinimaImageFilter.h.

Self& itk::simple::RegionalMinimaImageFilter::SetFlatIsMinima ( bool  FlatIsMinima)
inline

Set/Get wether a flat image must be considered as a minima or not. Defaults to true.

Definition at line 105 of file sitkRegionalMinimaImageFilter.h.

Self& itk::simple::RegionalMinimaImageFilter::SetForegroundValue ( double  ForegroundValue)
inline

Set/Get the value in the output image to consider as "foreground". Defaults to maximum value of PixelType.

Definition at line 81 of file sitkRegionalMinimaImageFilter.h.

Self& itk::simple::RegionalMinimaImageFilter::SetFullyConnected ( bool  FullyConnected)
inline

Set/Get whether the connected components are defined strictly by face connectivity or by face+edge+vertex connectivity. Default is FullyConnectedOff. For objects that are 1 pixel wide, use FullyConnectedOn.

Definition at line 91 of file sitkRegionalMinimaImageFilter.h.

std::string itk::simple::RegionalMinimaImageFilter::ToString ( ) const
virtual

Print ourselves out

Reimplemented from itk::simple::ProcessObject.

Friends And Related Function Documentation

Definition at line 137 of file sitkRegionalMinimaImageFilter.h.

Member Data Documentation

double itk::simple::RegionalMinimaImageFilter::m_BackgroundValue
private

Definition at line 143 of file sitkRegionalMinimaImageFilter.h.

bool itk::simple::RegionalMinimaImageFilter::m_FlatIsMinima
private

Definition at line 148 of file sitkRegionalMinimaImageFilter.h.

double itk::simple::RegionalMinimaImageFilter::m_ForegroundValue
private

Definition at line 145 of file sitkRegionalMinimaImageFilter.h.

bool itk::simple::RegionalMinimaImageFilter::m_FullyConnected
private

Definition at line 147 of file sitkRegionalMinimaImageFilter.h.

nsstd::auto_ptr<detail::MemberFunctionFactory<MemberFunctionType> > itk::simple::RegionalMinimaImageFilter::m_MemberFactory
private

Definition at line 139 of file sitkRegionalMinimaImageFilter.h.


The documentation for this class was generated from the following file: