Refactoring Level-Set framework - V4

This page outlines the proposed changes to the current Level-Set framework. A number of these changes will break backwards compatibility.

Authors

The proposed changes for the Level-Set framework are being proposed by the Megason-Lab, Systems Biology Department, Harvard Medical School.

Questions and comments regarding these changes should be sent to

• Arnaud Gelas (arnaud_gelas -at- hms.harvard.edu)
• Sean Megason (sean_megason -at- hms.harvard.edu)

Other team members include:

• Kishore Mosaliganti (kishore_mosaliganti -at- hms.harvard.edu)
• Nicolas Rannou (nicolas_rannou -at- hms.harvard.edu)

Tcons

• 29 July. Attendees: Karthik Krishnan (Kitware), Lucas Antiga (Orobix), Kishore Mosaliganti (Harvard), Arnaud Gelas (Harvard)
• 1 September. Attendees: Olivier Bernard (Creatis), Joel Schaerer (Creatis), Kishore Mosaliganti (Harvard), Arnaud Gelas (Harvard)

Ideas

Term class

Represent on term of the PDE. First example of implementation (not complete) located at http://github.com/lantiga/ModularLevelSets.

• One weight (scalar)
• One Level Set Function
• virtual GetCFLContribution() = 0;
• virtual Value() = 0;
• virtual bool IsStreamable() = 0

Term Container class

• std::map< id, Term > to be able to dynamically chaVirtual Value() = 0;
• bool IsStreamable(); // iterate on all term elements as long as there is streamable element.

Term Sum Container

• Inherit form Term Container
• Implement Value as sum of all elements from the container

Term Product Container

• Inherit form Term Container
• Implement Value as product of all elements from the container

LevelSetFunctionBase

• Virtual Value() = 0;
• Virtual Grad() = 0;
• Virtual Hessian() = 0;
• Virtual bool IsStreamable() = 0;

LocalStructure

• Location x
• std::pair< bool, xxx > value (bool encode if its characteristics has already been computed)
• std::pair< bool, xxx > grad
• Etc…

Reinitialization Filter

• Input: one level set function
• Output: one level set function
• Virtual void GenerateData() = 0; // processing

Stopping criterion

• Functor?
• Phi^{n}
• Phi^{n-1}
• Number of iterations
• Check for additional values that can be passed (to avoid as much as possible explosion of computational cost!!!)

SamplingDomain

• Represents the domain where the level set PDE is sampled, and thus used to solve the PDE equation.
• Iterator Begin();
• Iterator End();
• Iterator Iterator::operator ++ ( -- ? )